About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
Need Help?

Genomic sequencing in an oesophageal adenocarcinoma cohort

Genome sequencing was used to assess genomic alterations associated with survival in a Swedish cohort of 65 oesophageal adenocarcinoma (OAC) patients. Primary tumour tissues and matched normal squamous oesophagus tissues were sequenced using a 451 cancer-associated gene panel. This dataset consists of sequence data in fastq format.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000045
version: 2021-02-23

not for profit organisation use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations.

OAC DAA (REMS)

Make an application for access to this dataset through the REMS system at the Garvan Institute of Medical Research: https://rems.public.garvan.org.au/catalogue The Data Access Agreement form can be accessed once a REMS application has been started.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002190 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50001047103 fastq.gz 1.5 GB
EGAF50001047104 fastq.gz 946.0 MB
EGAF50001047105 fastq.gz 714.5 MB
EGAF50001047106 fastq.gz 996.9 MB
EGAF50001047107 fastq.gz 574.6 MB
EGAF50001047108 fastq.gz 840.6 MB
EGAF50001047109 fastq.gz 726.8 MB
EGAF50001047110 fastq.gz 748.2 MB
EGAF50001047111 fastq.gz 729.5 MB
EGAF50001047112 fastq.gz 755.9 MB
EGAF50001047113 fastq.gz 957.8 MB
EGAF50001047114 fastq.gz 830.0 MB
EGAF50001047115 fastq.gz 825.0 MB
EGAF50001047116 fastq.gz 655.9 MB
EGAF50001047117 fastq.gz 1.3 GB
EGAF50001047118 fastq.gz 1.3 GB
EGAF50001047119 fastq.gz 1.4 GB
EGAF50001047120 fastq.gz 906.3 MB
EGAF50001047121 fastq.gz 1.2 GB
EGAF50001047122 fastq.gz 907.0 MB
EGAF50001047123 fastq.gz 897.1 MB
EGAF50001047124 fastq.gz 706.3 MB
EGAF50001047125 fastq.gz 4.1 MB
EGAF50001047126 fastq.gz 4.1 MB
EGAF50001047127 fastq.gz 851.6 MB
EGAF50001047128 fastq.gz 710.5 MB
EGAF50001047129 fastq.gz 903.7 MB
EGAF50001047130 fastq.gz 899.8 MB
EGAF50001047131 fastq.gz 1.0 GB
EGAF50001047132 fastq.gz 898.3 MB
EGAF50001047133 fastq.gz 851.9 MB
EGAF50001047134 fastq.gz 711.0 MB
EGAF50001047135 fastq.gz 710.1 MB
EGAF50001047136 fastq.gz 1.5 GB
EGAF50001047137 fastq.gz 910.1 MB
EGAF50001047138 fastq.gz 838.8 MB
EGAF50001047139 fastq.gz 1.3 GB
EGAF50001047140 fastq.gz 901.6 MB
EGAF50001047141 fastq.gz 688.9 MB
EGAF50001047142 fastq.gz 633.9 MB
EGAF50001047143 fastq.gz 639.2 MB
EGAF50001047144 fastq.gz 1.0 GB
EGAF50001047145 fastq.gz 962.3 MB
EGAF50001047146 fastq.gz 1.2 GB
EGAF50001047147 fastq.gz 964.1 MB
EGAF50001047148 fastq.gz 755.8 MB
EGAF50001047149 fastq.gz 693.8 MB
EGAF50001047150 fastq.gz 788.3 MB
EGAF50001047151 fastq.gz 906.8 MB
EGAF50001047152 fastq.gz 5.7 MB
EGAF50001047153 fastq.gz 5.7 MB
EGAF50001047154 fastq.gz 748.4 MB
EGAF50001047155 fastq.gz 642.6 MB
EGAF50001047156 fastq.gz 984.3 MB
EGAF50001047157 fastq.gz 675.2 MB
EGAF50001047158 fastq.gz 647.1 MB
EGAF50001047159 fastq.gz 969.2 MB
EGAF50001047160 fastq.gz 1.1 GB
EGAF50001047161 fastq.gz 1.2 GB
EGAF50001047162 fastq.gz 706.2 MB
EGAF50001047163 fastq.gz 1.4 GB
EGAF50001047164 fastq.gz 930.4 MB
EGAF50001047165 fastq.gz 1.0 GB
EGAF50001047166 fastq.gz 1.2 GB
EGAF50001047167 fastq.gz 1.9 GB
EGAF50001047168 fastq.gz 844.8 MB
EGAF50001047169 fastq.gz 2.0 GB
EGAF50001047170 fastq.gz 1.0 GB
EGAF50001047171 fastq.gz 676.4 MB
EGAF50001047172 fastq.gz 802.5 MB
EGAF50001047173 fastq.gz 805.2 MB
EGAF50001047174 fastq.gz 1.1 GB
EGAF50001047175 fastq.gz 911.2 MB
EGAF50001047176 fastq.gz 1.2 GB
EGAF50001047177 fastq.gz 2.0 GB
EGAF50001047178 fastq.gz 1.2 GB
EGAF50001047179 fastq.gz 1.1 GB
EGAF50001047180 fastq.gz 1.0 GB
EGAF50001047181 fastq.gz 1.1 GB
EGAF50001047182 fastq.gz 813.3 MB
EGAF50001047183 fastq.gz 1.1 GB
EGAF50001047184 fastq.gz 1.1 GB
EGAF50001047185 fastq.gz 1.1 GB
EGAF50001047186 fastq.gz 1.4 GB
EGAF50001047187 fastq.gz 1.0 GB
EGAF50001047188 fastq.gz 704.2 MB
EGAF50001047189 fastq.gz 1.3 GB
EGAF50001047190 fastq.gz 1.4 GB
EGAF50001047191 fastq.gz 1.2 GB
EGAF50001047192 fastq.gz 1.2 GB
EGAF50001047193 fastq.gz 1.6 GB
EGAF50001047194 fastq.gz 1.6 GB
EGAF50001047195 fastq.gz 662.9 MB
EGAF50001047196 fastq.gz 906.1 MB
EGAF50001047197 fastq.gz 1.5 GB
EGAF50001047198 fastq.gz 691.9 MB
EGAF50001047199 fastq.gz 700.9 MB
EGAF50001047200 fastq.gz 1.4 GB
EGAF50001047201 fastq.gz 707.5 MB
EGAF50001047202 fastq.gz 932.1 MB
EGAF50001047203 fastq.gz 837.7 MB
EGAF50001047204 fastq.gz 726.1 MB
EGAF50001047205 fastq.gz 838.9 MB
EGAF50001047206 fastq.gz 966.6 MB
EGAF50001047207 fastq.gz 970.4 MB
EGAF50001047208 fastq.gz 646.0 MB
EGAF50001047209 fastq.gz 1.4 GB
EGAF50001047210 fastq.gz 664.2 MB
EGAF50001047211 fastq.gz 672.1 MB
EGAF50001047212 fastq.gz 749.1 MB
EGAF50001047213 fastq.gz 753.9 MB
EGAF50001047214 fastq.gz 1.1 GB
EGAF50001047215 fastq.gz 1.1 GB
EGAF50001047216 fastq.gz 722.9 MB
EGAF50001047217 fastq.gz 1.3 GB
EGAF50001047218 fastq.gz 828.4 MB
EGAF50001047219 fastq.gz 1.1 GB
EGAF50001047220 fastq.gz 1.1 GB
EGAF50001047221 fastq.gz 943.2 MB
EGAF50001047222 fastq.gz 679.5 MB
EGAF50001047223 fastq.gz 678.8 MB
EGAF50001047224 fastq.gz 640.8 MB
EGAF50001047225 fastq.gz 994.8 MB
EGAF50001047226 fastq.gz 990.8 MB
EGAF50001047227 fastq.gz 452.9 MB
EGAF50001047228 fastq.gz 458.8 MB
EGAF50001047229 fastq.gz 842.9 MB
EGAF50001047230 fastq.gz 837.5 MB
EGAF50001047231 fastq.gz 968.7 MB
EGAF50001047232 fastq.gz 812.8 MB
EGAF50001047233 fastq.gz 818.0 MB
EGAF50001047234 fastq.gz 578.8 MB
EGAF50001047235 fastq.gz 625.6 MB
EGAF50001047236 fastq.gz 627.2 MB
EGAF50001047237 fastq.gz 945.1 MB
EGAF50001047238 fastq.gz 942.7 MB
EGAF50001047239 fastq.gz 983.0 MB
EGAF50001047240 fastq.gz 1.0 GB
EGAF50001047241 fastq.gz 1.0 GB
EGAF50001047242 fastq.gz 1.0 GB
EGAF50001047243 fastq.gz 1.0 GB
EGAF50001047244 fastq.gz 1.2 GB
EGAF50001047245 fastq.gz 673.8 MB
EGAF50001047246 fastq.gz 672.5 MB
EGAF50001047247 fastq.gz 1.1 GB
EGAF50001047248 fastq.gz 1.1 GB
EGAF50001047249 fastq.gz 901.1 MB
EGAF50001047250 fastq.gz 832.3 MB
EGAF50001047251 fastq.gz 913.1 MB
EGAF50001047252 fastq.gz 908.4 MB
EGAF50001047253 fastq.gz 762.6 MB
EGAF50001047254 fastq.gz 772.0 MB
EGAF50001047255 fastq.gz 676.3 MB
EGAF50001047256 fastq.gz 954.2 MB
EGAF50001047257 fastq.gz 892.1 MB
EGAF50001047258 fastq.gz 3.6 MB
EGAF50001047259 fastq.gz 3.5 MB
EGAF50001047260 fastq.gz 685.4 MB
EGAF50001047261 fastq.gz 858.1 MB
EGAF50001047262 fastq.gz 1.1 GB
EGAF50001047263 fastq.gz 1.1 GB
EGAF50001047264 fastq.gz 1.1 GB
EGAF50001047265 fastq.gz 1.1 GB
EGAF50001047266 fastq.gz 1.1 GB
EGAF50001047267 fastq.gz 870.1 MB
EGAF50001047268 fastq.gz 874.1 MB
EGAF50001047269 fastq.gz 8.2 MB
EGAF50001047270 fastq.gz 8.3 MB
EGAF50001047271 fastq.gz 896.5 MB
EGAF50001047272 fastq.gz 894.8 MB
EGAF50001047273 fastq.gz 1.4 GB
EGAF50001047274 fastq.gz 1.4 GB
EGAF50001047275 fastq.gz 682.0 MB
EGAF50001047276 fastq.gz 683.5 MB
EGAF50001047277 fastq.gz 783.8 MB
EGAF50001047278 fastq.gz 784.8 MB
EGAF50001047279 fastq.gz 773.2 MB
EGAF50001047280 fastq.gz 791.7 MB
EGAF50001047281 fastq.gz 775.3 MB
EGAF50001047282 fastq.gz 826.1 MB
EGAF50001047283 fastq.gz 806.8 MB
EGAF50001047284 fastq.gz 1.1 GB
EGAF50001047285 fastq.gz 1.1 GB
EGAF50001047286 fastq.gz 972.4 MB
EGAF50001047287 fastq.gz 962.0 MB
EGAF50001047288 fastq.gz 1.1 GB
EGAF50001047289 fastq.gz 1.0 GB
EGAF50001047290 fastq.gz 1.0 GB
EGAF50001047291 fastq.gz 1.1 GB
EGAF50001047292 fastq.gz 1.1 GB
EGAF50001047293 fastq.gz 917.1 MB
EGAF50001047294 fastq.gz 1.2 GB
EGAF50001047295 fastq.gz 1.2 GB
EGAF50001047296 fastq.gz 3.5 MB
EGAF50001047297 fastq.gz 3.5 MB
EGAF50001047298 fastq.gz 1.2 GB
EGAF50001047299 fastq.gz 1.9 GB
EGAF50001047300 fastq.gz 1.2 GB
EGAF50001047301 fastq.gz 1.2 GB
EGAF50001047302 fastq.gz 629.4 MB
EGAF50001047303 fastq.gz 653.1 MB
EGAF50001047304 fastq.gz 738.0 MB
EGAF50001047305 fastq.gz 730.2 MB
EGAF50001047306 fastq.gz 831.9 MB
EGAF50001047307 fastq.gz 821.0 MB
EGAF50001047308 fastq.gz 1.2 GB
EGAF50001047309 fastq.gz 1.2 GB
EGAF50001047310 fastq.gz 947.3 MB
EGAF50001047311 fastq.gz 936.7 MB
EGAF50001047312 fastq.gz 1.0 GB
EGAF50001047313 fastq.gz 1.0 GB
EGAF50001047314 fastq.gz 1.3 GB
EGAF50001047315 fastq.gz 1.3 GB
EGAF50001047316 fastq.gz 1.0 GB
EGAF50001047317 fastq.gz 1.0 GB
EGAF50001047318 fastq.gz 3.1 MB
EGAF50001047319 fastq.gz 3.0 MB
EGAF50001047320 fastq.gz 1.2 GB
EGAF50001047321 fastq.gz 1.2 GB
EGAF50001047322 fastq.gz 1.1 GB
EGAF50001047323 fastq.gz 1.1 GB
EGAF50001047324 fastq.gz 654.9 MB
EGAF50001047325 fastq.gz 646.6 MB
EGAF50001047326 fastq.gz 757.2 MB
EGAF50001047327 fastq.gz 745.5 MB
EGAF50001047328 fastq.gz 966.8 MB
EGAF50001047329 fastq.gz 957.3 MB
EGAF50001047330 fastq.gz 1.1 GB
EGAF50001047331 fastq.gz 1.1 GB
EGAF50001047332 fastq.gz 944.4 MB
EGAF50001047333 fastq.gz 929.1 MB
EGAF50001047334 fastq.gz 1.1 GB
EGAF50001047335 fastq.gz 891.8 MB
EGAF50001047336 fastq.gz 880.4 MB
EGAF50001047337 fastq.gz 927.2 MB
EGAF50001047338 fastq.gz 936.9 MB
EGAF50001047339 fastq.gz 817.7 MB
EGAF50001047340 fastq.gz 1.1 GB
EGAF50001047341 fastq.gz 1.1 GB
EGAF50001047342 fastq.gz 985.6 MB
EGAF50001047343 fastq.gz 983.5 MB
EGAF50001047344 fastq.gz 926.1 MB
EGAF50001047345 fastq.gz 926.6 MB
EGAF50001047346 fastq.gz 1.2 GB
EGAF50001047347 fastq.gz 1.2 GB
EGAF50001047348 fastq.gz 1.0 GB
EGAF50001047349 fastq.gz 1.1 GB
EGAF50001047350 fastq.gz 998.8 MB
EGAF50001047351 fastq.gz 993.5 MB
EGAF50001047352 fastq.gz 1.1 GB
250 Files (230.2 GB)