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RNA sequencing of Lynch syndrome colorectal neoplasia and normal tissue

Bulk RNA sequencing of 36 FFPE colorectal tissue samples from Lynch syndrome participants, including normal tissue, adenomas and carcinomas. The dataset contains GRCh37-aligned BAM files and their corresponding BAI indexes.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000018
version: 2021-02-23

not for profit, non commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

Lynch Vaccine group Data Access Policy – Lynch Syndrome Adenoma Genomic Data

Access to the genomic datasets submitted by the Maruvka Laboratory (Technion – Israel Institute of Technology) is restricted to bona fide researchers for legitimate non-commercial scientific research purposes only. Approved users must agree to the following conditions: 1. Data shall be used solely for the research purpose described in the approved application. 2. Data must not be used to attempt to identify or re-contact individual research participants. 3. Data must be stored securely and must not be shared with unauthorized third parties. 4. Any publications resulting from use of this data must acknowledge the original study and cite the relevant EGA dataset accession number. 5. Access is granted to the named applicant only and is non-transferable. 6. The approved user must notify the DAC of any unintended data breaches immediately. 7. Access may be revoked at any time if these conditions are violated. Applications will be reviewed within 45 days of submission.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001920 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50001088106 bam 2.3 GB
EGAF50001088107 bam 1.3 GB
EGAF50001088108 bam 2.3 GB
EGAF50001088109 bam 2.0 GB
EGAF50001088110 bam 1.5 GB
EGAF50001088111 bam 1.6 GB
EGAF50001088112 bam 1.4 GB
EGAF50001088113 bam 1.7 GB
EGAF50001088114 bam 2.2 GB
EGAF50001088115 bam 2.6 GB
EGAF50001088116 bam 2.5 GB
EGAF50001088117 bam 2.4 GB
EGAF50001088118 bam 2.3 GB
EGAF50001088119 bam 2.4 GB
EGAF50001088120 bam 1.8 GB
EGAF50001088121 bam 1.1 GB
EGAF50001088122 bam 2.9 GB
EGAF50001088123 bam 2.7 GB
EGAF50001088124 bam 2.0 GB
EGAF50001088125 bam 2.2 GB
EGAF50001088126 bam 2.1 GB
EGAF50001088127 bam 2.1 GB
EGAF50001088128 bam 1.9 GB
EGAF50001088129 bam 2.3 GB
EGAF50001088130 bam 2.1 GB
EGAF50001088131 bam 1.1 GB
EGAF50001088132 bam 2.0 GB
EGAF50001088133 bam 2.1 GB
EGAF50001088134 bam 847.5 MB
EGAF50001088135 bam 425.7 MB
EGAF50001088136 bam 1.9 GB
EGAF50001088137 bam 1.9 GB
EGAF50001088138 bam 1.9 GB
EGAF50001088139 bam 2.4 GB
EGAF50001088140 bam 1.8 GB
EGAF50001088141 bam 1.5 GB
EGAF50001088142 bai 3.3 MB
EGAF50001088143 bai 2.7 MB
EGAF50001088144 bai 3.2 MB
EGAF50001088145 bai 3.0 MB
EGAF50001088146 bai 2.8 MB
EGAF50001088147 bai 2.8 MB
EGAF50001088148 bai 2.7 MB
EGAF50001088149 bai 2.7 MB
EGAF50001088150 bai 3.0 MB
EGAF50001088151 bai 3.3 MB
EGAF50001088152 bai 3.2 MB
EGAF50001088153 bai 3.2 MB
EGAF50001088154 bai 3.1 MB
EGAF50001088155 bai 3.2 MB
EGAF50001088156 bai 2.8 MB
EGAF50001088157 bai 2.4 MB
EGAF50001088158 bai 3.3 MB
EGAF50001088159 bai 3.3 MB
EGAF50001088160 bai 3.1 MB
EGAF50001088161 bai 3.2 MB
EGAF50001088162 bai 3.1 MB
EGAF50001088163 bai 3.1 MB
EGAF50001088164 bai 3.1 MB
EGAF50001088165 bai 3.2 MB
EGAF50001088166 bai 3.3 MB
EGAF50001088167 bai 2.8 MB
EGAF50001088168 bai 3.2 MB
EGAF50001088169 bai 3.2 MB
EGAF50001088170 bai 2.7 MB
EGAF50001088171 bai 2.5 MB
EGAF50001088172 bai 3.1 MB
EGAF50001088173 bai 3.1 MB
EGAF50001088174 bai 3.1 MB
EGAF50001088175 bai 3.4 MB
EGAF50001088176 bai 3.0 MB
EGAF50001088177 bai 2.8 MB
72 Files (69.7 GB)