12400 results for ""statistically+reactive"+taxa+in+microbial+community"

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• Sequencing probands and families with severe insulin resistance syndromes

  This is an ongoing project and continuation to all the sequencing we have been doing over the last few years. We have some additional families and probands with syndromes of insulin resistance not previously sequenced within uk10k or other core funded projects. We would like to complete the sequencing in all of the good quality families and probands we have, this would require another ~50 samples to be WES sequenced. This cohort has already proven to be a rich source of interesting findings with papers in Science and Nature genetics.

  Dataset EGAD00001000694

• RNASeq_EGAS00001001306

  RNASeq sequencing. Each library was sequenced using TruSeq SBS Kit v3-HS, in paired-end mode with a read length of 2 × 76 bp. We generated more than 20 million paired-end reads for each sample in a fraction of a sequencing lane on HiSeq2000 (Illumina Inc.) following the manufacturer’s protocol. Image analysis, base calling and quality scoring of the run were processed using the manufacturer’s software Real Time Analysis (RTA 1.13.48) and followed by generation of FASTQ sequence files.

  Dataset EGAD00001001443

• Raw FASTQ files from TSO500 hybrid capture sequencing of prostate cancer tissue and plasma.

  This dataset contains raw genomic sequencing data in FASTQ format for a total of 49 libraries. It includes 22 samples derived from formalin-fixed paraffin-embedded (FFPE) tissue and 27 samples from plasma cell-free DNA (cfDNA). All samples were processed using the Illumina TruSight Oncology 500 (TSO500) hybrid capture panel to identify relevant genomic alterations. These files represent the primary, non-aligned data used for the comparative performance analysis described in the associated study.

  Dataset EGAD50000002463

• Pan-cancer MSI and Lynch syndrome

  This study comprises genome-wide SNP genotyping data generated from 24 human samples using the Illumina Global Screening Array (GSA) platform. Genomic DNA was extracted from peripheral blood samples and processed according to the manufacturer’s protocol. Genotyping was performed using the Infinium assay, producing raw intensity data in IDAT format.

  Study EGAS00001008405

• Genome-wide gene expression analysis following CRISPRi of transposable elements

  human induced pluripotent stem cells constitutely expressing the CRISPRi machinery were transduced with gRNAs targeting genomic regions of transposable elements (TEs), and differentiated to neural progenitor cells. The aim of the study was to annotate the function of these TEs in the context of early neurodevelopmental processes.

  Study EGAS00001008265

• EGAD00010000560

  SNP array of 7 HCCs and matched background liver in children with bile salt export pump deficiency

  Dataset EGAD00010000560

• Mutational landscape and clonal architecture in grade-II/III gliomas

  Dataset EGAD00001001213

• preQC Genotypes

  preQC genotype data from the Affymetrix AxiomTM HGCoV2 1 array in plink ped/map format

  Dataset EGAD00010002437

• Integration of metabolomics, genomics and immune phenotypes reveals the causal roles of metabolites in disease

  Study EGAS00001005348

• Targeted analysis of cell-free circulating tumor DNA is suitable for early relapse and actionable target detection in patients with neuroblastoma

  Study EGAS00001006027