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Type

dac dataset documentation study

Repository

dbgap ega jga

Study type

affected sib pairs aggregate genomic data cancer genomics case set case-cohort case-control clinical cohort clinical trial cohort collection control set controlled trial copy number variation (cnv) cross-sectional epigenetics eqtl exome sequencing family full transcriptome sequencing interventional longitudinal longitudinal cohort metagenomics metastasis methods development nested case-control observational other parent-offspring trios population genomics prospective randomized controlled clinical trial resequencing rna sequencing rnaseq sequencing single cell analysis single cell rna sequence snp array analysis target capture sequencing target sequencing targeted capture dna sequencing targeted capture sequence targeted dna sequencing transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal twin virus capture sequencing whole genome sequencing whole-genome bisulfite sequencing

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

454 gs junior ab 5500 genetic analyzer ab 5500xl genetic analyzer ab genechip scanner 3000 7g system clariom s ab solid 4 system ab solid system ab solid system 3.0 affymetrics axiom snp array 2.0 affymetrix affymetrix 6.0 affymetrix cytoscan hd affymetrix expression array affymetrix genechip mirna 4.0 affymetrix human transcriptome array 2.0 affymetrix oncoscan, affymetrix snp6.0, affymetrix cytocan hd affymetrix snp 6.0 affymetrix, thermo fisher scientific affymetrix_snp6 affymetrix_snp6- beadarray complete genomics dnbseq-g400 epic array (illumina) epic_850k genechip hta 2.0 genechip human genome u133 plus 2.0 array genome-wide human snp array 6.0 or the cytoscan hd array gridion hiseq x five hiseq x ten human clariom d arrays human genome u219 array plate humanmethylation450 humanmethylation450k bead chip - genome studio humanomni1 quad beadchip illlimuna epic 450 k illumina illumina 450k illumina 670k (custom illumina human660w-quad) illumina 850k illumina 850k epic array illumina cytosnp illumina epic array illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina hiscansq illumina hiseq 1000 illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina ht12.4 illumina humancoreexome-24 array illumina humanexome-12v1_a illumina humanmethylation 450k illumina humanomni2.5 illumina infinium humanmethylation epic beadchip illumina infinium humanmethylation450 (450k) illumina infinium humanmethylation450 beadchip illumina infinium methylationepic array illumina infinium methylationepic beadchip illumina infinium methylationepic beadchip (850 k) illumina infiniumomniexpressexome-8 illumina methylationepic beadchip array illumina miseq illumina novaseq 6000 illumina novaseq x illumina omni express beadchip illumina_humanmethylation450 ilumina infinium humanmethylationepic beadchip array infinium humanmethylation450 beadchip infinium methylation epic beadchip infinium methylationepic beadchip ion torrent pgm ion torrent proton ion torrent s5 ion torrent s5 xl minion miseq na nanostring expression immunology panel nanostring ncounterâ® pancancer io 360â„¢ nextseq 1000 nextseq 2000 nextseq 500 nextseq 550 pacbio rs pacbio rs ii promethion qexactive plus sequel snp6 unspecified

Phenotypes

[CL:0000786] [CL:0000945] [EFO:0000096] [EFO:0000174] [EFO:0000209] [EFO:0000220] [EFO:0000239] [EFO:0000248] [EFO:0000280] [EFO:0000311] [EFO:0000322] [EFO:0000349] [EFO:0000350] [EFO:0000403] [EFO:0000437] [EFO:0000478] [EFO:0000502] [EFO:0000519] [EFO:0000571] [EFO:0000574] [EFO:0000621] [EFO:0000622] [EFO:0000623] [EFO:0000624] [EFO:0000625] [EFO:0000681] [EFO:0000691] [EFO:0000702] [EFO:0000708] [EFO:0000761] [EFO:0000980] [EFO:0001378] [EFO:0002787] [EFO:0002918] [EFO:0002939] [EFO:0005406] [EFO:0005537] [EFO:0005543] [EFO:0005699] [EFO:0005842] [EFO:0005922] [EFO:0007365] [EFO:0009119] [EFO:0009375] [EFO:0009654] [EFO:1000042] [EFO:1000075] [EFO:1000128] [EFO:1000231] [EFO:1000238] [EFO:1000288] [EFO:1000292] [EFO:1000327] [EFO:1000348] [EFO:1000349] [EFO:1000360] [EFO:1000453] [EFO:1000796] [EFO:1001469] [EFO:1001514] [EFO:1001515] [EFO:1001830] [EFO:1001958] [MONDO:0002630] [MONDO:0002631] [MONDO:0003537] [MONDO:0005005] [MONDO:0005072] [MONDO:0006058] [MONDO:0016698] [MONDO:0016700] [MONDO:0017043] [MONDO:0018906] [MONDO:0020511] [NCIT:C120224] [NCIT:C121793] [NCIT:C121804] [NCIT:C178466] [NCIT:C2945] [NCIT:C3107] [NCIT:C3359] [NCIT:C3400] [NCIT:C3745] [NCIT:C3749] [NCIT:C3750] [NCIT:C4244] [NCIT:C4817] [NCIT:C6481] [NCIT:C6970] [NCIT:C8094] [NCIT:C8971] [NCIT:C9145] [Orphanet:544] [Orphanet:654] [PATO:0000461] [UBERON:0000178] [UBERON:0000966] [UBERON:0001134] [UBERON:0002371]

Duo

0000001 0000004 0000005 0000006 0000007 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

Domain

adelaide.edu.au amc.uva.nl aphp.fr bcm.edu besta.it cc.ucsf.edu ccri.at charite.de clin.au.dk conicet.gov.ar crick.ac.uk cruk.cam.ac.uk ctc.usyd.edu.au cumc.columbia.edu curie.fr dcu.ie dfci.harvard.edu dkfz due.de duesseldorf.de email.chop.edu embl.de emory.edu essen.de fno.cz freiburg.de fudan.edu.cn garvan.org.au gist.ac.kr gmail.com gu.se gustaveroussy.fr hadassah.org.il heidelberg.de helsinki.fi hotmail.com icr.ac.uk imim.es imperial.ac.uk istituto jhmi.edu kcl.ac.uk kiel.de kispi.uzh.ch kitz koeln.de kuleuven.be leeds.ac.uk luebeck.de lumc.nl mail.ubc.ca mcgill.ca mdanderson.org med.cornell.edu med.lu.se med.miami.edu med.uni melanoma.org.au mgh.harvard.edu mskcc.org ncc.re.kr nccs.com.sg newcastle.ac.uk nki.nl ntu.edu.tw nyulangone.org path.uni pgdx.com prinsesmaximacentrum.nl prostatecentre.com pumch.cn qimrberghofer.edu.au qmul.ac.uk recerca.clinic.cat saludcastillayleon.es sanger.ac.uk satmeg.se scsalud.es sickkids.ca soton.ac.uk stjude.org stu.ecnu.edu.cn surgery.gu.se sysucc.org.cn tum.de u.tsukuba.ac.jp ubc.ca ucl.ac.uk ucsf.edu uea.ac.uk uhn.ca uk ukr.de uksh.de uni uni.lu unibas.ch uniklinik unito.it upf.edu us.es usb.ch utsouthwestern.edu vumc.nl wehi.edu.au wuerzburg.de yale.edu yuhs.ac

4062 results for "*oma"

in 90.71 milliseconds.

Multi-omics analysis of pre-invasive lung adenocarcinoma in never-smokers

Multi-omics analysis of pre-invasive lung adenocarcinoma in never-smokers
Dac EGAC50000000385
Characterization of copy number quiet oral cancer

Copy number quiet head and neck squamous cell carcinoma are a distinct subset with relatively good prognosis. Previous work has indicated this subset is most commonly found in the oral cavity and is highly enriched for HRAS and CASP8 mutations. TP53 mutations are much less common than in CNA-quiet oral cancers. In this study we corroborate the validity of CNA-quiet tumors as a distinct subset in a large OSCC cohort and further chart clinical, genomic, and immunological characteristics of this subset.
Study EGAS50000000558

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