15153 results for "cancer studies using rna-seq"

in 23.09 milliseconds.

• T1DGC GWAS 1958 British Birth Cohort controls

  T1DGC genome-wide case-control association study for Type 1 Diabetes (T1D) using the 1958 British Birth Cohort as controls. The cases for this study are made available from the NCBI dbGAP.

  Study EGAS00000000038

• RCC_HTA2.0_Reustle2022

  GeneChip HTA 2.0 data of primary renal cell carcinoma (RCC) related to Reustle et al., Clin Transl Med 12:2022 e883. Microarrays were normalized individually using the SCAN method from the R package SCAN.UPC (version 2.26.0, R version 3.6.1). Probe sets were summarized on the Entrez GeneID level using the annotation provided by BrainArray (version 23).

  Dataset EGAD00010002352

• Genetic Etiology of Heterotaxy

  To understand the genetic etiology of heterotaxy, patients with heterotaxy were consented and recruited, with blood drawn for DNA extraction and exome sequencing. Using the exome sequencing dataset obtained, rare coding sequence variants were identified.

  Study phs001691

• Spatial Dynamics of the Developing Human Heart

  68 paired-end raw FASTQ files obtained from 38 tissue sections across 16 hearts, spanning embryonic human heart development between 5.5 and 14 postconceptional weeks. Some libraries were re-sequenced for better coverage. The tissue sections were processed using the 10x Genomics Visium Gene Expression kit, and libraries were paired-end sequenced using Nextseq2000 (Illumina).

  Dataset EGAD50000001615

• Establishment of iPS cells from Japanese healthy volunteers

  We performed whole exome sequencing of Japanese volunteers. We established iPSCs from those volunteers, and the iPSCs were deposited to Riken Bioresource Bank. The whole exome sequencing were performed using their PBMCs.

  Study JGAS000287

• Genome-Wide Bisulfite Sequencing of Urinary Cell-Free DNA

  The current sequencing dataset consists of 85 bisulfite sequencing data files (Fastq files) of human cell-free urine DNA samples. These extracted cfDNA samples were then constructed into DNA libraries using the KAPA HTP Library Preparation Kit (Kapa Biosystems) with bisulfite modification using the EpiTect Bisulfite Kit (Qiagen) and subsequently sequenced on the Nextseq500 platform (Illumina).

  Dataset EGAD50000001902

• The exploratory research of diagnositic biomarker and therapeutic targets of renal cell carcinoma.

  We search more effective markers, which predict worse prognosis in patients with RCC and become targets for therapy of RCC, using tissues of patients with RCC by global transcriptional analysis.

  Study JGAS000149

• WGS data of paediatric hyperdiploid B cell acute lymphoblastic leukemia (set1)

  The dataset includes FASTQ and BAM files from diagnostic and matched remission (control) samples of three hyperdiploid ALL patients (ALLT-329, ALLT-347, ALLT-356). Sequencing libraries were made using NEB Next® Ultra™ DNA Library Prep Kit. Both diagnostic (60x) and remission (30x) samples were sequenced using Illumina HiSeq X.

  Dataset EGAD50000002425

• Project MinE Illumina Infinium HumanMethylation450 (450k) BeadChip data on 2,790 Dutch whole blood samples, including 1,761 ALS patients of which 119 are known carriers of the C9orf72 repeat expansion.

  This dataset includes IDAT files from 2,790 blood samples. The samples were profiled using the Illumina Infinium HumanMethylation450 (450k) BeadChip.

  Study EGAS00001004587

• DNA methylation-based classification of sinonasal tumors [DNA sequencing]

  This dataset contains raw exome sequencing data from nine sinonasal undifferentiated carcinoma FFPE samples and matched normal tissue that were assigned to a shared epigenetic class using DNA methylation-based classification. They were analyzed using the Twist Human Core Exome Plus Kit (Twist Bioscience) on a NovaSeq 6000 sequencer.

  Dataset EGAD00001009668

• cfMeDIP data for 14 Barrier samples

  We analyzed the cell free DNA methylomes using 14 plasma samples from patients with mCRPC in the Barrier cohort. Methylation was profiled using the methylated DNA immunoprecipitation coupled to next generation sequencing (MeDIP) technology.

  Dataset EGAD00001008712

• WholeGenomeSeq-EGAS00001001306

  Whole Genome sequencing. 2 μg of genomic DNA from each sample was used for the construction of two short-insert paired-end sequencing libraries. Both types of libraries were sequenced in paired-end mode on Illumina GAIIx (2 × 151 bp) using Sequencing kit v4 or Illumina HiSeq2000 (2x101 bp) using TruSeq SBS Kit v3.

  Dataset EGAD00001001466

• Reproducibility of 10x Genomics single cell RNA sequencing method in the immune cell environment

  Study EGAS00001005905

• Human small intestinal macrophages whole transcriptome

  RNA sequencing data of human small intestinal macrophage subtypes

  Dataset EGAD00001002744

• EGAD00010000600

  Prostate Adenocarcinomas samples using 450K

  Dataset EGAD00010000600

• Primary human hepatocyte ATAC-seq

  Profiling the chromatin accessibility landscape of cultured primary human hepatocytes (PHH) from three female and three male adult, non-diabetic donors.

  Dataset EGAD50000001751

• β-catenin ChIP sequencing in HCC models.

  This dataset contains ChIP sequencing data for β-catenin, H3K27ac and H3K27me3 from three HCC cell lines and five tumour organoids under normal conditions and oleic acid treatment.

  Dataset EGAD50000001816

• Bulk exome sequencing of primary GBM - SF 10282

  We performed bulk exome-seq on a primary GBM and a blood sample from SF10282

  Dataset EGAD00001002275

• Bulk exome sequencing of primary GBM - SF 10345

  We performed bulk exome-seq on a primary GBM and a blood sample from SF10345

  Dataset EGAD00001002273

• scATAC-seq dataset of A cycling, progenitor-like cell population at the root of atypical teratoid rhabdoid tumor subtype differentiation trajectories

  Study describing the differentiation trajectory...

  Dataset EGAD00001015546