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• Transcriptome of human CD4+ T-lymphyocyte (naive-T-cells) treated with Oligomycin from donor D1, replicate 2, glucose concentration 5mM

  Dataset EGAD00001008080

• Transcriptome of human CD4+ T-lymphyocyte (naive-T-cells) treated with Rotenone from donor D1, replicate 2, glucose concentration 5mM

  Dataset EGAD00001008082

• Transcriptome of human CD4+ T-lymphyocyte (naive-T-cells) treated with Oligomycin from donor D2, replicate 2, glucose concentration 5mM

  Dataset EGAD00001008084

• Transcriptome of human CD4+ T-lymphyocyte (naive-T-cells) treated with Rotenone from donor D2, replicate 2, glucose concentration 5mM

  Dataset EGAD00001008086

• Transcriptome of human CD4+ T-lymphyocyte (regulatory-T-cells) treated with Resveratrol from donor D2, replicate 2, glucose concentration 5mM

  Dataset EGAD00001008074

• Transcriptome of human CD4+ T-lymphyocyte (naive-T-cells) treated with Resveratrol from donor D3, replicate 2, glucose concentration 5mM

  Dataset EGAD00001008076

• Average_5mC_DIFF_Roadmap

  Average methylation difference 12 months vs 0 months at Roadmap Epigenomics chromatin state annotations from different cell types using nanopolish. Data from 8 individuals.

  Dataset EGAD00010002410

• Effects of interferon-gamma treatment on human small intestinal organoids.

  Intestinal organoids treated with interferon-gamma 1 ng/mL either for 6h or 18h.

  Dataset EGAD50000000115

• bulkRNAseq of ovarian cancer cell lines

  bulkRNAseq of four ovarian cancer cell lines (PA-1, A2780, A2780/CP20, TOV-21G)

  Dataset EGAD50000002059

• Targeted capture ctDNA Library CRCQV42Run024-16

  Targeted capture ctDNA Library CRCQV42Run024-16 from patient PBC0003641, TNBC FFPE sample

  Dataset EGAD00001010468

• Targeted capture ctDNA Library CRCQV42Run029-5

  Targeted capture ctDNA Library CRCQV42Run029-5 from patient PBC0002533, TNBC FFPE sample

  Dataset EGAD00001010518

• RNAseq sample

  RNAseq sample used in study titled "Immune-awakening revealed by peripheral T cell dynamics after one cycle of immunotherapy".

  Dataset EGAD00001005747

• Reference epigenome Fat-adipocyte04 mRNA-Seq data generated from KEP study

  Fat-adipocyte04 mRNA-Seq paired end data

  Dataset EGAD00001007158

• Reference epigenome Pancreas-Islet08 mRNA-Seq data generated from KEP study

  Pancreas-Islet08 mRNA-Seq paired end data

  Dataset EGAD00001007168

• Reference epigenome Islet-derived-iPSC01 WGBS data generated from KEP study

  Islet-derived-iPSC01 WGBS paired end data

  Dataset EGAD00001007144

• Reference epigenome Islet-derived-iPSC02 WGBS data generated from KEP study

  Islet-derived-iPSC02 WGBS paired end data

  Dataset EGAD00001007145

• Reference epigenome Fat-adipocyte03 mRNA-Seq data generated from KEP study

  Fat-adipocyte03 mRNA-Seq paired end data

  Dataset EGAD00001007157

• Reference epigenome Fat-adipocyte05 mRNA-Seq data generated from KEP study

  Fat-adipocyte05 mRNA-Seq paired end data

  Dataset EGAD00001007159

• Reference epigenome Islet-derived-MSC04 WGBS data generated from KEP study

  Islet-derived-MSC04 WGBS paired end data

  Dataset EGAD00001007143

• Targeted capture ctDNA Library CRCQV42Run025-8

  Targeted capture ctDNA Library CRCQV42Run025-8 from patient PBC0003385, TNBC FFPE sample

  Dataset EGAD00001010486

• Targeted capture ctDNA Library CRCQV42Run026-17

  Targeted capture ctDNA Library CRCQV42Run026-17 from patient PBC0003643, TNBC FFPE sample

  Dataset EGAD00001010490

• Reference epigenome Islet-derived_MSC06 mRNA-Seq data generated from KEP study

  Islet-derived_MSC06 mRNA-Seq paired end data

  Dataset EGAD00001007878

• Reference epigenome Islet-derived-MSC01 WGBS data generated from KEP study

  Islet-derived-MSC01 WGBS paired end data

  Dataset EGAD00001007140

• CTCF-ChIP-Seq of cohesin-mutated and wildtype adult AMLs

  ChIP-Seq targeting CTCF in cohesin-mutated (STAG2 or RAD21 mutations) and wildtype adult AMLs (CTRL-AMLs).

  Dataset EGAD00001011200

• Targeted capture ctDNA Library CRCQV42Run022-7

  Targeted capture ctDNA Library CRCQV42Run022-7 from patient PBC0002744, TNBC FFPE sample

  Dataset EGAD00001010458

• Reference epigenome SMC05 h3k9me3 ChIP-Seq data generated from KEP study

  SMC05 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007336

• Reference epigenome Islet-derived-MSC02 WGBS data generated from KEP study

  Islet-derived-MSC02 WGBS paired end data

  Dataset EGAD00001007141

• Fecal 16S HV metadata

  Metadata for fecal 16S-V4 rRNA gene sequence data from NCT02749630 healthy volunteers.

  Dataset EGAD00001008821

• Reference epigenome Pancreas-Islet07 mRNA-Seq data generated from KEP study

  Pancreas-Islet07 mRNA-Seq paired end data

  Dataset EGAD00001007167

• Targeted capture ctDNA Library CRCQV42Run026-14

  Targeted capture ctDNA Library CRCQV42Run026-14 from patient PBC0003587, TNBC FFPE sample

  Dataset EGAD00001010487

• Targeted capture ctDNA Library CRCQV42Run029-11

  Targeted capture ctDNA Library CRCQV42Run029-11 from patient PBC0001353, TNBC FFPE sample

  Dataset EGAD00001010511

• Targeted capture ctDNA Library CRCQV42Run026-15

  Targeted capture ctDNA Library CRCQV42Run026-15 from patient PBC0002872, TNBC FFPE sample

  Dataset EGAD00001010488

• Reference epigenome Pancreas-Islet06 mRNA-Seq data generated from KEP study

  Pancreas-Islet06 mRNA-Seq paired end data

  Dataset EGAD00001007166

• Reference epigenome SMC01 h3k4me3 ChIP-Seq data generated from KEP study

  SMC01 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007311

• Treatment arm information and sample sheet

  Table of treatment arm information for the 418 RNAseq evaluable population.

  Dataset EGAD00001009502

• Reference epigenome OB56_N_PreA_smRNA-Seq data generated from KEP study

  A OB56_N_PreA_smRNA-Seq single end data for Preadipocytes(fat)

  Dataset EGAD00001003495

• Reference epigenome IPS02_N_NPC_WGBS data generated from KEP study

  A IPS02_N_NPC_WGBS paired end data for Neural progenitor cells(Nestin)

  Dataset EGAD00001003474

• Reference epigenome IPS03_N_ENeuron_WGBS data generated from KEP study

  A IPS03_N_ENeuron_WGBS paired end data for Early neuron cells(Tuj1)

  Dataset EGAD00001003475

• Reference epigenome OB57_D_PreA_mRNA-Seq data generated from KEP study

  A OB57_D_PreA_mRNA-Seq paired end data for Preadipocyte(fat)

  Dataset EGAD00001003487

• Reference epigenome CKD25_C_Podo_smRNA-Seq data generated from KEP study

  A CKD25_C_Podo_smRNA-Seq single end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003499

• Reference epigenome CKD25_C_Podo_mRNA-Seq data generated from KEP study

  A CKD25_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003483

• RNA sequencing data to study "A biobank of patient-derived pediatric braintumor models"

  RNA sequencing data for the PDOX model EPD-613FH

  Dataset EGAD00001003573

• McGill EMC Release 4 in tissue "Brodmann (1909) area 44"

  McGill EMC Release 4 in tissue "Brodmann (1909) area 44"

  Dataset EGAD00001001285

• Reference epigenome CKD24_C_Podo_mRNA-Seq data generated from KEP study

  A CKD24_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003482

• Reference epigenome OB57_D_PreA_smRNA-Seq data generated from KEP study

  A OB57_D_PreA_smRNA-Seq single end data for Preadipocyte(fat)

  Dataset EGAD00001003496

• McGill EMC Release 4 in tissue "Brodmann (1909) area 11"

  McGill EMC Release 4 in tissue "Brodmann (1909) area 11"

  Dataset EGAD00001001284

• Reference epigenome CKD24_C_Podo_smRNA-Seq data generated from KEP study

  A CKD24_C_Podo_smRNA-Seq single end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

  Dataset EGAD00001003498

• Targeted capture ctDNA Library CRCQV42Run024-11

  Targeted capture ctDNA Library CRCQV42Run024-11 from patient PBC0001306, TNBC FFPE sample

  Dataset EGAD00001010465

• Targeted capture ctDNA Library CRCQV42Run025-6

  Targeted capture ctDNA Library CRCQV42Run025-6 from patient PBC0003014, TNBC FFPE sample

  Dataset EGAD00001010484

• Covacta RNAseq merged EGA metadata

  Sample metadata for the RNA-seq dataset. This dataset includes subject-level data and longitudinal visit day information for the corresponding samples.

  Dataset EGAD00001011162

• Res1_PC9_exp2_MC_01.04.22

  8 cell pellet samples for genomic DNA extraction. CRISPR PCR1 and PCR2 indexing - Please use standard Kosuke primers.

  Dataset EGAD00001012233

• Reference epigenome Islet-derived-MSC03 WGBS data generated from KEP study

  Islet-derived-MSC03 WGBS paired end data

  Dataset EGAD00001007142

• Reference epigenome ADMSC05 h3k27me3 ChIP-Seq data generated from KEP study

  ADMSC05 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007375

• Targeted capture ctDNA Library CRCQV42Run025-10

  Targeted capture ctDNA Library CRCQV42Run025-10 from patient PBC0001335, TNBC FFPE sample

  Dataset EGAD00001010476

• Average_5mC_Roadmap_histoneMarks

  Average methylation levels based on nanopolish calls from Roadmap Epigenomics histone mark annotations using different cell types. Data from 8 individuals at different time points.

  Dataset EGAD00010002422

• Average_5hmC_Roadmap_histoneMarks

  Average hydroxymethylation levels based on megalodon calls from Roadmap Epigenomics histone mark annotations using different cell types. Data from 8 individuals at different time points.

  Dataset EGAD00010002417

• Average_5hmC_Roadmap_chromatinStates

  Average hydroxymethylation levels based on megalodon calls from Roadmap Epigenomics chromatin state annotations using different cell types. Data from 8 individuals at different time points.

  Dataset EGAD00010002414

• Average_5mC_Roadmap_chromatinStates

  Average methylation levels based on nanopolish calls from Roadmap Epigenomics chromatin state annotations using different cell types. Data from 8 individuals at different time points.

  Dataset EGAD00010002413

• Reference epigenome SMC01 h3k9me3 ChIP-Seq data generated from KEP study

  SMC01 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007312

• Reference epigenome SMC08 h3k27ac ChIP-Seq data generated from KEP study

  SMC08 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007344

• Reference epigenome ADMSC06 h3k9me3 ChIP-Seq data generated from KEP study

  ADMSC06 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007386

• Reference epigenome SMC09 h3k9me3 ChIP-Seq data generated from KEP study

  SMC09 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007354

• Mixing Sample Low Grade Glioma Gender Male, Age , 34,44

  Mixed Sample of scRNA-Seq primary low grade glioma. Genders: Male, Age: 34, 44.

  Dataset EGAD00001006018

• Reference epigenome SMC02 h3k36me3 ChIP-Seq data generated from KEP study

  SMC02 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007315

• Reference epigenome SMC04 h3k9me3 ChIP-Seq data generated from KEP study

  SMC04 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007330

• Reference epigenome ADMSC06 input ChIP-Seq data generated from KEP study

  ADMSC06 input ChIP-Seq paired end data

  Dataset EGAD00001007387

• Reference epigenome ADMSC01 h3k27ac ChIP-Seq data generated from KEP study

  ADMSC01 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007356

• Reference epigenome ADMSC01 input ChIP-Seq data generated from KEP study

  ADMSC01 input ChIP-Seq paired end data

  Dataset EGAD00001007361

• Reference epigenome ADMSC02 h3k36me3 ChIP-Seq data generated from KEP study

  ADMSC02 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007363

• Reference epigenome ADMSC06 h3k4me3 ChIP-Seq data generated from KEP study

  ADMSC06 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007385

• Reference epigenome ADMSC08 h3k4me1 ChIP-Seq data generated from KEP study

  ADMSC08 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007398

• Reference epigenome KNIH011 WGBS data generated from KEP study

  A KNIH011 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for podocytes

  Dataset EGAD00001002759

• SF10619

  SF10619 snATAC Oligodendroglioma (WHO gr. 2).Tumor Location: Parietal. Age: 52. Sex: Male

  Dataset EGAD00001006316

• Reference epigenome SMC04 h3k4me1 ChIP-Seq data generated from KEP study

  SMC04 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007328

• Reference epigenome SMC04 h3k36me3 ChIP-Seq data generated from KEP study

  SMC04 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007327

• Reference epigenome SMC03 h3k9me3 ChIP-Seq data generated from KEP study

  SMC03 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007324

• Reference epigenome SMC04 h3k4me3 ChIP-Seq data generated from KEP study

  SMC04 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007329

• Reference epigenome ADMSC02 h3k4me1 ChIP-Seq data generated from KEP study

  ADMSC02 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007364

• Reference epigenome ADMSC06 h3k27me3 ChIP-Seq data generated from KEP study

  ADMSC06 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007382

• Reference epigenome ADMSC02 h3k4me3 ChIP-Seq data generated from KEP study

  ADMSC02 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007365

• Reference epigenome ADMSC02 h3k27ac ChIP-Seq data generated from KEP study

  ADMSC02 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007362

• Reference epigenome ADMSC05 h3k4me3 ChIP-Seq data generated from KEP study

  ADMSC05 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007378

• Reference epigenome ADMSC05 h3k9me3 ChIP-Seq data generated from KEP study

  ADMSC05 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007379

• Fecal 16S UC metadata

  Metadata for fecal 16S-V4 rRNA gene sequence data from NCT02749630 ulcerative colitis patients.

  Dataset EGAD00001008822

• Mucosal 16S metadata

  Metadata for 16S-V4 rRNA gene sequence data for intestinal biopsies from NCT02749630 trial participants.

  Dataset EGAD00001008823

• Reference epigenome SMC02 h3k4me1 ChIP-Seq data generated from KEP study

  SMC02 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007316

• Reference epigenome SMC05 h3k4me1 ChIP-Seq data generated from KEP study

  SMC05 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007334

• Reference epigenome Islet-derived-MSC03 miRNA-Seq data generated from KEP study

  Islet-derived-MSC03 miRNA-Seq single end data

  Dataset EGAD00001007183

• Reference epigenome Islet-derived-iPSC01 miRNA-Seq data generated from KEP study

  Islet-derived-iPSC01 miRNA-Seq single end data

  Dataset EGAD00001007185

• Reference epigenome Islet-derived-iPSC02 miRNA-Seq data generated from KEP study

  Islet-derived-iPSC02 miRNA-Seq single end data

  Dataset EGAD00001007186

• Reference epigenome SMC03 h3k27ac ChIP-Seq data generated from KEP study

  SMC03 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007320

• Reference epigenome SMC03 h3k36me3 ChIP-Seq data generated from KEP study

  SMC03 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007321

• Metadata annotation table

  Clinical data from IMblaze370: Clinical data include disease, treatment arm, MSI status, KRAS oncogenic mutation status, sex, and overall survival (1=dead, 0=alive)

  Dataset EGAD00001008551

• Reference epigenome Islet-derived-MSC02 miRNA-Seq data generated from KEP study

  Islet-derived-MSC02 miRNA-Seq single end data

  Dataset EGAD00001007182

• Reference epigenome SMC03 h3k4me3 ChIP-Seq data generated from KEP study

  SMC03 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007323

• Reference epigenome SMC09 input ChIP-Seq data generated from KEP study

  SMC09 input ChIP-Seq paired end data

  Dataset EGAD00001007355

• Reference epigenome SMC08 input ChIP-Seq data generated from KEP study

  SMC08 input ChIP-Seq paired end data

  Dataset EGAD00001007349

• Reference epigenome Islet-derived-MSC01 miRNA-Seq data generated from KEP study

  Islet-derived-MSC01 miRNA-Seq single end data

  Dataset EGAD00001007181

• Reference epigenome SMC01 h3k4me1 ChIP-Seq data generated from KEP study

  SMC01 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007310

• Reference epigenome SMC02 h3k9me3 ChIP-Seq data generated from KEP study

  SMC02 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007318