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• Reference epigenome SMC01 h3k27ac ChIP-Seq data generated from KEP study

  SMC01 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007308

• Reference epigenome ADMSC07 input ChIP-Seq data generated from KEP study

  ADMSC07 input ChIP-Seq paired end data

  Dataset EGAD00001007394

• Reference epigenome ADMSC08 h3k27Ac ChIP-Seq data generated from KEP study

  ADMSC08 h3k27Ac ChIP-Seq paired end data

  Dataset EGAD00001007395

• Reference epigenome SMC01 input ChIP-Seq data generated from KEP study

  SMC01 input ChIP-Seq paired end data

  Dataset EGAD00001007313

• Reference epigenome ADMSC08 h3k36me3 ChIP-Seq data generated from KEP study

  ADMSC08 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007397

• Reference epigenome SMC02 h3k4me3 ChIP-Seq data generated from KEP study

  SMC02 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007317

• Reference epigenome ADMSC08 h3k27me3 ChIP-Seq data generated from KEP study

  ADMSC08 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007396

• Reference epigenome ADMSC08 h3k4me3 ChIP-Seq data generated from KEP study

  ADMSC08 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007399

• Reference epigenome ADMSC08 h3k9me3 ChIP-Seq data generated from KEP study

  ADMSC08 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007400

• Reference epigenome SMC03 h3k4me1 ChIP-Seq data generated from KEP study

  SMC03 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007322

• Reference epigenome SMC04 h3k27ac ChIP-Seq data generated from KEP study

  SMC04 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007326

• Reference epigenome SMC05 h3k27ac ChIP-Seq data generated from KEP study

  SMC05 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007332

• Reference epigenome SMC05 h3k36me3 ChIP-Seq data generated from KEP study

  SMC05 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007333

• Reference epigenome SMC05 input ChIP-Seq data generated from KEP study

  SMC05 input ChIP-Seq paired end data

  Dataset EGAD00001007337

• Reference epigenome SMC07 h3k36me3 ChIP-Seq data generated from KEP study

  SMC07 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007339

• Reference epigenome SMC07 h3k4me1 ChIP-Seq data generated from KEP study

  SMC07 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007340

• Reference epigenome SMC07 h3k27ac ChIP-Seq data generated from KEP study

  SMC07 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007338

• Reference epigenome SMC08 h3k36me3 ChIP-Seq data generated from KEP study

  SMC08 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007345

• Reference epigenome SMC07 h3k4me3 ChIP-Seq data generated from KEP study

  SMC07 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007341

• Reference epigenome SMC07 h3k9me3 ChIP-Seq data generated from KEP study

  SMC07 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007342

• Reference epigenome SMC07 input ChIP-Seq data generated from KEP study

  SMC07 input ChIP-Seq paired end data

  Dataset EGAD00001007343

• Reference epigenome SMC08 h3k4me3 ChIP-Seq data generated from KEP study

  SMC08 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007347

• Reference epigenome SMC08 h3k9me3 ChIP-Seq data generated from KEP study

  SMC08 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007348

• Reference epigenome KNIH009 miRNA-seq data generated from KEP study

  A KNIH009 miRNA-seq single end data for preadipocytes

  Dataset EGAD00001002768

• Reference epigenome SMC09 h3k27ac ChIP-Seq data generated from KEP study

  SMC09 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007350

• Reference epigenome SMC09 h3k4me1 ChIP-Seq data generated from KEP study

  SMC09 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007352

• Reference epigenome ADMSC01 h3k36me3 ChIP-Seq data generated from KEP study

  ADMSC01 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007357

• Reference epigenome ADMSC01 h3k4me1 ChIP-Seq data generated from KEP study

  ADMSC01 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007358

• Reference epigenome ADMSC01 h3k4me3 ChIP-Seq data generated from KEP study

  ADMSC01 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007359

• Reference epigenome ADMSC01 h3k9me3 ChIP-Seq data generated from KEP study

  ADMSC01 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007360

• Reference epigenome KNIH010 WGBS data generated from KEP study

  A KNIH010 Whole-Genome Bisulfite Sequencing(WGBS) paired end data for podocytes

  Dataset EGAD00001002758

• Reference epigenome ADMSC05 h3k36me3 ChIP-Seq data generated from KEP study

  ADMSC05 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007376

• Reference epigenome ADMSC05 input ChIP-Seq data generated from KEP study

  ADMSC05 input ChIP-Seq paired end data

  Dataset EGAD00001007380

• Reference epigenome ADMSC07 h3k36me3 ChIP-Seq data generated from KEP study

  ADMSC07 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007390

• Reference epigenome ADMSC07 h3k4me3 ChIP-Seq data generated from KEP study

  ADMSC07 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007392

• Reference epigenome ADMSC07 h3k9me3 ChIP-Seq data generated from KEP study

  ADMSC07 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007393

• Reference epigenome ADMSC08 input ChIP-Seq data generated from KEP study

  ADMSC08 input ChIP-Seq paired end data

  Dataset EGAD00001007401

• Validation of a genome-wide polygenic score for body mass index in South Asians

  Genotyping data of BMI model markers generated using Global Screening Array (Illumina Inc.)

  Dataset EGAD00001015700

• Reference epigenome SMC04 input ChIP-Seq data generated from KEP study

  SMC04 input ChIP-Seq paired end data

  Dataset EGAD00001007331

• Reference epigenome SMC09 h3k4me3 ChIP-Seq data generated from KEP study

  SMC09 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007353

• Sample sheet

  Sample sheet linking anonymized sample IDs and anonymized patient IDs.

  Dataset EGAD00001011108

• Variant Calls

  Variant Calls for all 97 consenting participants in the study.

  Dataset EGAD00001009971

• Reference epigenome SMC01 h3k36me3 ChIP-Seq data generated from KEP study

  SMC01 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007309

• Reference epigenome SMC02 h3k27ac ChIP-Seq data generated from KEP study

  SMC02 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007314

• Reference epigenome SMC02 input ChIP-Seq data generated from KEP study

  SMC02 input ChIP-Seq paired end data

  Dataset EGAD00001007319

• Reference epigenome SMC05 h3k4me3 ChIP-Seq data generated from KEP study

  SMC05 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007335

• Reference epigenome SMC09 h3k36me3 ChIP-Seq data generated from KEP study

  SMC09 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007351

• Reference epigenome ADMSC02 h3k9me3 ChIP-Seq data generated from KEP study

  ADMSC02 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007366

• Reference epigenome ADMSC05 h3k4me1 ChIP-Seq data generated from KEP study

  ADMSC05 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007377

• Reference epigenome ADMSC06 h3k27Ac ChIP-Seq data generated from KEP study

  ADMSC06 h3k27Ac ChIP-Seq paired end data

  Dataset EGAD00001007381

• Reference epigenome ADMSC06 h3k4me1 ChIP-Seq data generated from KEP study

  ADMSC06 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007384

• Reference epigenome ADMSC07 h3k27Ac ChIP-Seq data generated from KEP study

  ADMSC07 h3k27Ac ChIP-Seq paired end data

  Dataset EGAD00001007388

• Reference epigenome ADMSC07 h3k27me3 ChIP-Seq data generated from KEP study

  ADMSC07 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007389

• Reference epigenome ADMSC06 h3k36me3 ChIP-Seq data generated from KEP study

  ADMSC06 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007383

• DLP+ Single Cell Genomic Library A98193

  DLP+ Single Cell Genomic Library A98193 for Follicular lymphoma patient sample TFRI_Pair_6_FL

  Dataset EGAD00001010241

• DLP+ Single Cell Genomic Library A98205

  DLP+ Single Cell Genomic Library A98205 for Follicular lymphoma patient sample TFRIPAIR9_FL

  Dataset EGAD00001010243

• DLP+ Single Cell Genomic Library A98297

  DLP+ Single Cell Genomic Library A98297 for Follicular lymphoma patient sample TFRIPAIR3_FL

  Dataset EGAD00001010248

• Reference epigenome KNIH009 mRNA-seq data generated from KEP study

  A KNIH009 mRNA-seq paired end data for preadipocytes

  Dataset EGAD00001002175

• Reference epigenome SMC07_smRNA-Seq data generated from KEP study

  A SMC07_smRNA-Seq single end data for skeletal muscle cells

  Dataset EGAD00001003864

• Reference epigenome ADMSC02_ChIP-Seq(H3K27me3) data generated from KEP study

  A ADMSC02_ChIP-Seq(H3K27me3) paired end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003855

• Reference epigenome SMC09_smRNA-Seq data generated from KEP study

  A SMC09_smRNA-Seq single end data for skeletal muscle cells

  Dataset EGAD00001003866

• Reference epigenome SMC03_smRNA-Seq data generated from KEP study

  A SMC03_smRNA-Seq single end data for skeletal muscle cells

  Dataset EGAD00001003860

• Reference epigenome SMC08_smRNA-Seq data generated from KEP study

  A SMC08_smRNA-Seq single end data for skeletal muscle cells

  Dataset EGAD00001003865

• Reference epigenome KNIH007 mRNA-seq data generated from KEP study

  A KNIH007 mRNA-seq paired end data for adipocytes

  Dataset EGAD00001002173

• Reference epigenome SMC01_smRNA-Seq data generated from KEP study

  A SMC01_smRNA-Seq single end data for skeletal muscle cells

  Dataset EGAD00001003858

• Reference epigenome DB31_N_Alpha_WGBS data generated from KEP study

  A DB31_N_Alpha_WGBS paired end data for alpha cells(PSA-NCAM(-), pancreas)

  Dataset EGAD00001003472

• Reference epigenome ADMSC01_ChIP-Seq(H3K27me3) data generated from KEP study

  A ADMSC01_ChIP-Seq(H3K27me3) paired end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003854

• Reference epigenome SMC06_smRNA-Seq data generated from KEP study

  A SMC06_smRNA-Seq single end data for skeletal muscle cells

  Dataset EGAD00001003863

• Reference epigenome SMC04_smRNA-Seq data generated from KEP study

  A SMC04_smRNA-Seq single end data for skeletal muscle cells

  Dataset EGAD00001003861

• Reference epigenome SMC05_smRNA-Seq data generated from KEP study

  A SMC05_smRNA-Seq single end data for skeletal muscle cells

  Dataset EGAD00001003862

• Reference epigenome ADMSC04_ChIP-Seq(H3K27me3) data generated from KEP study

  A ADMSC04_ChIP-Seq(H3K27me3) paired end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003857

• Reference epigenome KNIH008 mRNA-seq data generated from KEP study

  A KNIH008 mRNA-seq paired end data for adipocytes

  Dataset EGAD00001002174

• Reference epigenome SMC02_smRNA-Seq data generated from KEP study

  A SMC02_smRNA-Seq single end data for skeletal muscle cells

  Dataset EGAD00001003859

• Reference epigenome ADMSC03_ChIP-Seq(H3K27me3) data generated from KEP study

  A ADMSC03_ChIP-Seq(H3K27me3) paired end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003856

• RNA data for MMML (EGAS00001002422)

  RNA sequencing data for MMML (3 tumor samples and 1 gcbcell)

  Dataset EGAD00001003285

• Reference epigenome ADMSC01_WGBS data generated from KEP study

  A ADMSC01_WGBS paired end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003878

• Reference epigenome ADMSC02_WGBS data generated from KEP study

  A ADMSC02_WGBS paired end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003879

• Reference epigenome ADMSC03_WGBS data generated from KEP study

  A ADMSC03_WGBS paired end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003880

• Reference epigenome ADMSC04_WGBS data generated from KEP study

  A ADMSC04_WGBS paired end data for adipose-derived mesenchymal stroaml cells

  Dataset EGAD00001003881

• Reference epigenome KNIH007 miRNA-seq data generated from KEP study

  A KNIH007 miRNA-seq single end data for adipocytes

  Dataset EGAD00001002766

• Reference epigenome KNIH008 miRNA-seq data generated from KEP study

  A KNIH008 miRNA-seq single end data for adipocytes

  Dataset EGAD00001002767

• Organoid Derivation Project WGS: Release 1

  Sequencing of tissue samples and their derived organoids from oesophageal, pancreatic and colorectal cancer patients.

  Dataset EGAD00001005000

• Res1_H23_exp2_MC_13.07.22

  8 samples are cell pellets for genomic DNA extraction. CRISPR PCR1 and PCR2 indexing - Please use standard Kosuke primers.

  Dataset EGAD00001012234

• Reference epigenome ADMSC03 h3k27ac ChIP-Seq data generated from KEP study

  ADMSC03 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007368

• Reference epigenome SMC08 h3k4me1 ChIP-Seq data generated from KEP study

  SMC08 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007346

• Reference epigenome Islet-derived-MSC04 miRNA-Seq data generated from KEP study

  Islet-derived-MSC04 miRNA-Seq single end data

  Dataset EGAD00001007184

• Reference epigenome SMC03 input ChIP-Seq data generated from KEP study

  SMC03 input ChIP-Seq paired end data

  Dataset EGAD00001007325

• Reference epigenome ADMSC02 input ChIP-Seq data generated from KEP study

  ADMSC02 input ChIP-Seq paired end data

  Dataset EGAD00001007367

• Reference epigenome ADMSC03 h3k36me3 ChIP-Seq data generated from KEP study

  ADMSC03 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007369

• Reference epigenome ADMSC03 h3k4me1 ChIP-Seq data generated from KEP study

  ADMSC03 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007370

• Reference epigenome ADMSC03 h3k4me3 ChIP-Seq data generated from KEP study

  ADMSC03 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007371

• Reference epigenome ADMSC03 h3k9me3 ChIP-Seq data generated from KEP study

  ADMSC03 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007372

• Reference epigenome ADMSC03 input ChIP-Seq data generated from KEP study

  ADMSC03 input ChIP-Seq paired end data

  Dataset EGAD00001007373

• Reference epigenome ADMSC05 h3k27Ac ChIP-Seq data generated from KEP study

  ADMSC05 h3k27Ac ChIP-Seq paired end data

  Dataset EGAD00001007374

• The complex SNP and CNV genetic architecture of the increased risk of congenital heart defects in Down syndrome

  Here we aimed to contribute to the description of the genetic architecture of Congenital heart defect (CHD) in Down syndrome (DS), and report the results of a genome-wide association study using samples from DS individuals with and without CHD. CHD is a common developmental defect of DS occurring in 40% of cases. This case-control GWAS includes 187 DS with CHD as cases, and 151 DS without CHD as controls.

  Study EGAS00000000129

• Differential gene expression in the colon mucosa of irritable bowel syndrome patients with diarrhea-predominant symptoms

  The aim of this study is to characterize the pathophysiology of the irritable bowel syndrome (IBS) on the functional level and in parallel on the gene expression level. For this purpose RNAseq of mucosal biopsies was performed. The data from the differential expression analysis will be further processed by Ingenuity Pathway Analysis (IPA) software to gather Information on activated or inhibited signaling pathways in the disease.

  Study EGAS50000000046

• Arcagen – thoracic malignancies

  Arcagen is an EORTC/SPECTA pan-European project that aims to recruit 1000 rare cancer patients from different tumour domains of EURACAN. This study collected samples from advanced or metastatic rare cancer from patients older than 12, and analysed them using Foundation Medicine next-generation sequencing (NGS) panels (FoundationOne CDx for FFPE samples or FoundationOne Liquid CDx for blood samples). Here we are submitting the dataset that contain NGS files from rare thoracic malignancies (n=102)

  Study EGAS50000000123

• Gene Expression of Small Cell Carcinoma of the Ovary-Hypercalcemic Type (SCCOHT)

  Small cell carcinoma of the ovary-hypercalcemic type (SCCOHT) is a rare and aggressive form of ovarian cancer afflicting young women at a median age of 24 years. SCCOHTs are characterized by loss of protein expression of SWI/SNF chromatin remodeling ATPases SMARCA4 and SMARCA2 through mutation and epigenetic silencing, respectively. This study aims to establish gene expression profiles of this cancer through RNA-Seq of fourteen pathologically confirmed cases of SCCOHT tumors.

  Study phs001528

• Genetics of Schizophrenia in an Ashkenazi Jewish Case-Control Cohort

  Schizophrenia is characterized by high heritability (~80%), yet the identification of susceptibility genes has proven extremely challenging. The Ashkenazi Jewish population, derived from a limited number of founders, may be enriched for a subset of susceptibility alleles, which may also have higher odds ratios than those detected by previous studies. GWAS was conducted in a large Ashkenazi case-control cohort, derived from the Hebrew University Genetic Resource, using the Illumina HumanOmni1-Quad BeadChip.

  Study phs000448

• Stand Up 2 Cancer (SU2C) Genomics-Enabled Medicine for Melanoma (GEMM) Trial

  The goal of the GEMM Trial is to ascertain if comprehensive and systematic interrogation of a patient's tumor molecular profile improves outcomes compared to the current practice of physician's choice for metastatic melanoma patients who have progressed following first line therapy. The data shared here includes tumor/normal exome and tumor RNAseq data for the trial patients, as well as archival data for a subset of patients.

  Study phs001786