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• Single cell RNAseq of PBMC from bladder cancer patients

  Frozen PBMC samples containing at least 1 million cells were thawed for 1 minute at 37C and washed twice with RPMI complete media (10% FBS with glutamate and Pen/Strep). All of the samples had >80% viable cells. Sample processing for single-cell RNA-seq was done using Chromium Single Cell 3’ Library and Gel bead kit v2 (PN-120237) following manufacturer’s user guide (CG00052, 10x Genomics, Pleasanton, CA). The total cell density was used to impute the volume of single cell suspension needed in the reverse transcription (RT) master mix, aiming to achieve ~ 6,000 cells per sample. cDNAs and libraries were prepared following manufacturer’s user guide (10x Genomics). cDNA amplification and indexed libraries were prepared using 12 and 14 cycles of PCR, respectively. Libraries were profiled, quantified, and sequenced as 5’ single-cell gene expression libraries.

  Study EGAS00001004008

• Single cell RNAseq of PBMC from RCC patients

  Frozen PBMC samples containing at least 1 million cells were thawed for 1 minute at 37C and washed twice with RPMI complete media (10% FBS with glutamate and Pen/Strep). All of the samples had >80% viable cells. Sample processing for single-cell RNA-seq was done using Chromium Single Cell 3’ Library and Gel bead kit v2 (PN-120237) following manufacturer’s user guide (CG00052, 10x Genomics, Pleasanton, CA). The total cell density was used to impute the volume of single cell suspension needed in the reverse transcription (RT) master mix, aiming to achieve ~ 6,000 cells per sample. cDNAs and libraries were prepared following manufacturer’s user guide (10x Genomics). cDNA amplification and indexed libraries were prepared using 12 and 14 cycles of PCR, respectively. Libraries were profiled, quantified, and sequenced as 5’ single-cell gene expression libraries.

  Study EGAS00001004451

• NanoString nCounter® PanCancer IO 360™on anti-PD1/anti-PD1+CTLA4 in patients with metastatic melanoma

  Patients with advanced melanoma were treated with standard-of-care single agent anti-PD-1 (nivolumab or pembrolizumab) or a combined anti-PD-1+anti-CTLA-4 (ipilimumab) therapy. Patients were retrospectively identified, based on formalin-fixed paraffin-embedded (FFPE) tissue availability. Total RNA was isolated from macro-dissected FFPE tissue sections using the AllPrep DNA/RNA FFPE Kit (Qiagen) or High Pure FFPET RNA Isolation Kit (Roche) according to the manufacturer’s instructions. RNA quantity was assessed on Qubit, and RNA integrity was assessed using the Tapestation system (Agilent). Total RNA samples (60ng/ul, total 200ng) were used as input for the NanoString PanCancer IO360 Panel, run on the nCounter MAX/FLEX prep station and scanner. Samples were hybridised for 20hrs, and each cartridge contained a panel standard.

  Study EGAS00001006977

• EGAD00000000045

  Genomic sequencing and transcriptome shotgun sequencing of a metastatic tumour and its recurrence after drug therapy in a single patient

  Dataset EGAD00000000045

• Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing

  Dataset EGAD00001000856

• cqmuGWAS1

  DNA for 1546 individuals from Chongqing was extract from peripheral blood and genotyped by Illumina Omni Zhonghua-8 version 1 gene chips.

  Dataset EGAD00010001527

• oacoch-M-1

  Methylation changes in OA patients with chronic exposure to cobalt and chromium

  Dataset EGAD00010001040

• CIRdb-CEU1

  Single Nucleotide Polymorphisms in autosomes of Canary Islanders

  Dataset EGAD00010002294

• Transcriptome of (peripheral blood), from donor Sample A, replicate 2 FACS processing technical replicates

  FACS processing technical replicates

  Dataset EGAD00001010087

• Single-cell multiomics reveals the interplay of clonal evolution and cellular plasticity in hepatoblastoma

  Dataset EGAD00001010049

• Targeted capture ctDNA Library CRCQV42Run021-6

  Targeted capture ctDNA Library CRCQV42Run021-6 from patient PBC0001304, saliva sample

  Dataset EGAD00001010447

• Targeted capture ctDNA Library CRCQV42Run051-9

  Targeted capture ctDNA Library CRCQV42Run051-9 from patient PBC0003587, plasma sample

  Dataset EGAD00001010822

• SF10432 Wildtype Primary GBM Female, 50

  Single Cell-RNA Seq of Wildtype Primary GBM for Female, Age 50.

  Dataset EGAD00001006019

• Fecal WMS HV metadata

  Metadata for fecal WMS data from NCT02749630 healthy volunteers.

  Dataset EGAD00001008819

• Reference epigenome ADMSC08 WGBS data generated from KEP study

  ADMSC08 WGBS paired end data

  Dataset EGAD00001007139

• Reference epigenome ADMSC06 WGBS data generated from KEP study

  ADMSC06 WGBS paired end data

  Dataset EGAD00001007137

• Targeted capture ctDNA Library CRCQV42Run022-18

  Targeted capture ctDNA Library CRCQV42Run022-18 from patient PBC0002826, saliva sample

  Dataset EGAD00001010453

• Reference epigenome IPS-NPC02 h3k4me3 ChIP-Seq data generated from KEP study

  IPS-NPC02 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007288

• Targeted capture ctDNA Library CRCQV42Run42-17

  Targeted capture ctDNA Library CRCQV42Run42-17 from patient PBC0001375, saliva sample

  Dataset EGAD00001010828

• RNAseq data for EGAS00001004572

  Bulk RNA-seq data of tumours in EGAS00001004572.

  Dataset EGAD00001006876

• Targeted capture ctDNA Library CRCQV42Run051-8

  Targeted capture ctDNA Library CRCQV42Run051-8 from patient PBC0002294, plasma sample

  Dataset EGAD00001010821

• Targeted capture ctDNA Library CRCQV42Run021-23

  Targeted capture ctDNA Library CRCQV42Run021-23 from patient PBC0001516, saliva sample

  Dataset EGAD00001010444

• Targeted capture ctDNA Library CRCQV42Run020-14

  Targeted capture ctDNA Library CRCQV42Run020-14 from patient PBC0001312, saliva sample

  Dataset EGAD00001010426

• Targeted capture ctDNA Library CRCQV42Run021-24

  Targeted capture ctDNA Library CRCQV42Run021-24 from patient PBC0001653, saliva sample

  Dataset EGAD00001010445

• Targeted capture ctDNA Library CRCQV42Run025-17

  Targeted capture ctDNA Library CRCQV42Run025-17 from patient PBC0003595, saliva sample

  Dataset EGAD00001010481

• Reference epigenome ADMSC05 WGBS data generated from KEP study

  ADMSC05 WGBS paired end data

  Dataset EGAD00001007136

• Reference epigenome ADMSC07 WGBS data generated from KEP study

  ADMSC07 WGBS paired end data

  Dataset EGAD00001007138

• Targeted capture ctDNA Library CRCQV42Run016-17

  Targeted capture ctDNA Library CRCQV42Run016-17 from patient PBC0001467, saliva sample

  Dataset EGAD00001010401

• RCRF release 1

  Transcriptome sequencing from the Rare Cancer Research Foundation: leiomyosarcoma, large cell neuroendocrine carcinoma, clear cell carcinoma

  Dataset EGAD00001010198

• Targeted capture ctDNA Library CRCQV34Run011-22

  Targeted capture ctDNA Library CRCQV34Run011-22 from patient PBC0002294, saliva sample

  Dataset EGAD00001010373

• Targeted capture ctDNA Library CRCQV34Run011-23

  Targeted capture ctDNA Library CRCQV34Run011-23 from patient PBC0001328, saliva sample

  Dataset EGAD00001010374

• Targeted capture ctDNA Library CRCQV40Run027-13

  Targeted capture ctDNA Library CRCQV40Run027-13 from patient PBC0005116, saliva sample

  Dataset EGAD00001010389

• Targeted capture ctDNA Library CRCQV42Run016-16

  Targeted capture ctDNA Library CRCQV42Run016-16 from patient PBC0001396, saliva sample

  Dataset EGAD00001010400

• Targeted capture ctDNA Library CRCQV42Run041-5

  Targeted capture ctDNA Library CRCQV42Run041-5 from patient PBC0001375, saliva sample

  Dataset EGAD00001010635

• Targeted capture ctDNA Library CRCQV42Run041-13

  Targeted capture ctDNA Library CRCQV42Run041-13 from patient PBC0001413, saliva sample

  Dataset EGAD00001010627

• Targeted capture ctDNA Library CRCQV42Run051-10

  Targeted capture ctDNA Library CRCQV42Run051-10 from patient PBC0001665, plasma sample

  Dataset EGAD00001010804

• Targeted capture ctDNA Library CRCQV42Run028-23

  Targeted capture ctDNA Library CRCQV42Run028-23 from patient PBC0002533, saliva sample

  Dataset EGAD00001010508

• Small variants in HAE of patients from Canary Islands (ITER)

  Small variants in HAE of several Canary Islanders sequenced with Illumina WES.

  Dataset EGAD00001009318

• Targeted capture ctDNA Library CRCQV42Run026-19

  Targeted capture ctDNA Library CRCQV42Run026-19 from patient PBC0002872, saliva sample

  Dataset EGAD00001010492

• Targeted capture ctDNA Library CRCQV34Run002-22

  Targeted capture ctDNA Library CRCQV34Run002-22 from patient PBC0002459, saliva sample

  Dataset EGAD00001010336

• Targeted capture ctDNA Library CRCQV34Run002-18

  Targeted capture ctDNA Library CRCQV34Run002-18 from patient PBC0002062, saliva sample

  Dataset EGAD00001010333

• Targeted capture ctDNA Library CRCQV34Run002-20

  Targeted capture ctDNA Library CRCQV34Run002-20 from patient PBC0002108, saliva sample

  Dataset EGAD00001010334

• Targeted capture ctDNA Library CRCQV34Run002-21

  Targeted capture ctDNA Library CRCQV34Run002-21 from patient PBC0002429, saliva sample

  Dataset EGAD00001010335

• Targeted capture ctDNA Library CRCQV34Run002-23

  Targeted capture ctDNA Library CRCQV34Run002-23 from patient PBC0002595, saliva sample

  Dataset EGAD00001010337

• Targeted capture ctDNA Library CRCQV34Run007-15

  Targeted capture ctDNA Library CRCQV34Run007-15 from patient PBC0001255, saliva sample

  Dataset EGAD00001010356

• Targeted capture ctDNA Library CRCQV34Run007-18

  Targeted capture ctDNA Library CRCQV34Run007-18 from patient PBC0001845, saliva sample

  Dataset EGAD00001010357

• Targeted capture ctDNA Library CRCQV34Run007-20

  Targeted capture ctDNA Library CRCQV34Run007-20 from patient PBC0002680, saliva sample

  Dataset EGAD00001010358

• Targeted capture ctDNA Library CRCQV34Run011-21

  Targeted capture ctDNA Library CRCQV34Run011-21 from patient PBC0002255, saliva sample

  Dataset EGAD00001010372

• Targeted capture ctDNA Library CRCQV34Run011-18

  Targeted capture ctDNA Library CRCQV34Run011-18 from patient PBC0001432, saliva sample

  Dataset EGAD00001010370

• Targeted capture ctDNA Library CRCQV34Run011-20

  Targeted capture ctDNA Library CRCQV34Run011-20 from patient PBC0001673, saliva sample

  Dataset EGAD00001010371