22951 results for "ega"

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• A108863A

  Whole genome sequencing for single cells for library A108863A 1301 cells; filetype=bam

  Dataset EGAD00001007597

• A110618B

  Whole genome sequencing for single cells for library A110618B 1047 cells; filetype=bam

  Dataset EGAD00001007600

• A96120A

  Whole genome sequencing for single cells for library A96120A 1143 cells; filetype=bam

  Dataset EGAD00001007640

• RNA-Seq of chronic lymphocytic leukemia

  398 runs and 184 samples of CLL paired RNA-Seq. Sequences were prepared with the Illumina TruSeq RNA Kit. Paired sequencing was done on Hiseq2000 or Hiseq2500.

  Dataset EGAD00001009637

• A98172B

  Whole genome sequencing for single cells for library A98172B 941 cells; filetype=bam

  Dataset EGAD00001007641

• Detection of uniparental disomy in a family trio WGS

  We detected a uniparental paternal isodisomy event of chromosome 4 in a child. DNA was extracted from the blood. HiSeq X generated the sequence data.

  Dataset EGAD00001008676

• ChIP sequencing in Cancer Cell Lines

  The project is to evaluate the genomic binding sites of the histone demethylase JARID1C. This gene was recently identified in CGP as a novel recessive cancer gene in human renal cell carcinoma.

  Dataset EGAD00001001453

• RNA-seq of multi-regional CRC samples

  BAM files of RNA sequencing (RNA-seq) experiment on multi-regional colorectal cancer (CRC) samples. 58 samples corresponding to 16 patients were sequenced and there is one BAM file for each sample.

  Dataset EGAD00001006164

• Transcriptome analysis of Tcells from blood, fat and skin

  Tcells were isolated fom Tissues and FACS sorted. In total 50 samples were processed in 5 replicates with the Takara SmartSeq Stranded kit. Single end fastq-files are supplied.

  Dataset EGAD00001007663

• Single Cell Genome Sequence for DLP+ library A95652B

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient-derived xenograft SA1049A passage 1 on DLP+ library A95652B

  Dataset EGAD00001009327

• A95623B

  Whole genome sequencing for single cells for library A95623B 1363 cells; filetype=bam

  Dataset EGAD00001007608

• Targeted sequencing of brain AVMs

  Targeted sequencing data to look for the involvement of genes in the RAS-MAPK pathway, angiogenesis and brain vascular disorders among others, in brain AVMs

  Dataset EGAD00001009695

• A96155C

  Whole genome sequencing for single cells for library A96155C 1316 cells; filetype=bam

  Dataset EGAD00001007617

• A98289A

  Whole genome sequencing for single cells for library A98289A 1066 cells; filetype=bam

  Dataset EGAD00001007634

• A108732A

  Whole genome sequencing for single cells for library A108732A 1139 cells; filetype=bam

  Dataset EGAD00001007592

• Single Cell Genome Sequence for DLP+ library A96205B

  Single Cell Genome Sequence for high grade serous ovarian carcinoma patient-derived xenograft SA1049A passage 1 on DLP+ library A96205B

  Dataset EGAD00001009471

• A110618A

  Whole genome sequencing for single cells for library A110618A 1184 cells; filetype=bam

  Dataset EGAD00001007599

• A110673A

  Whole genome sequencing for single cells for library A110673A 1089 cells; filetype=bam

  Dataset EGAD00001007602

• 2 paired WGS samples of peritumour regions of colorectal cancer

  2 paired WGS samples of peritumour regions of colorectal cancer (2 patients). The library was prepared using the Illumina TruSeq Nano FFPE kit and the sequencing was done on NovaSeq6000.

  Dataset EGAD00001009714

• RNA-seq data from the tumor samples of a head and neck cancer patient

  This dataset contains paired-end RNA sequencing data (2x50 bp) from the three synchronous primary tumors and the recurrence of a head and neck cancer patient.

  Dataset EGAD00001006654

• ICGC PCAWG Dataset: RECA-EU_PCAWG_WGS_BWA

  ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: RECA-EU.

  Dataset EGAD00001002131

• ICGC PCAWG Dataset: PBCA-DE_PCAWG_WGS_BWA

  ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PBCA-DE.

  Dataset EGAD00001002127

• ICGC PCAWG Dataset: CLLE-ES_PCAWG_WGS_BWA

  ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: CLLE-ES.

  Dataset EGAD00001002130

• Richter Syndrome RNA-seq dataset

  Raw FASTQ files for 77 RS + DLBCL + CLL samples. RNA-sequencing with single-end 50 nt reads.

  Dataset EGAD00001007922

• Fecal WMS UC sequencing data

  Fecal WMS data from NCT02749630 ulcerative colitis patients. Stool samples were collected at screening as well as on day 64 and prepared for whole metagenomic sequencing.

  Dataset EGAD00001008817

• Exome sequencing files for "Minimal functional driver gene heterogeneity among untreated metastases"

  Files from whole exome sequencing of 14 tumors from two cancer patients (endometrial and lung cancer) along with a matched normal tissue per patient.

  Dataset EGAD00001004212

• Mucosal 16S sequencing data

  16S-V4 rRNA gene sequence data for intestinal biopsies from NCT02749630 trial participants. Biopsies from patients were collected at screening, day 30, and day 85 and prepared for 16SV4 rRNA gene sequencing.

  Dataset EGAD00001008843

• ICGC PCAWG Dataset: EOPC-DE_PCAWG_WGS_BWA

  ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: EOPC-DE.

  Dataset EGAD00001002124

• GATCI whole exome germline variants

  Exome sequences were aligned to the GRCH38 reference genome. Aligned sequence was analyzed with GATK Haplotype Caller to generate germline variant calls. Variant calls are in VCF format. Details for the call can be found in the VCF header

  Dataset EGAD00001005916

• NKI-AvL OpACIN RNA-seq of stage III melanoma patients

  The dataset “NKI-AvL OpACIN RNA-seq of stage III melanoma patients" includes 18 FASTQ files from single-end total RNA sequencing on Illumina HiSeq2500 for 18 stage III melanoma patients.

  Dataset EGAD00001004216

• scRNAseq of neuroblastoma PDX and cell lines

  This dataset contains the 22 bam files coresponding to the scRNAseq done in PDX models and cell lines.

  Dataset EGAD00001007870

• Exome and Targeted sequencing of GZL

  Tumor and matching normal exomes for 28 GZL cases (n=56) and targeted capture sequencing for 42 GZL cases with 3 matching normals and 2 pooled normals (n=47)

  Dataset EGAD00001006328

• Hydroxycarbamide effect on gene expression in MPN

  Whole RNA-sequencing of CD34+ cells and neutrophils derived from MPN patients before hydroxycarbamide treatment and after 9-months of treatment. CD34+ cells= 5 patients, 10 samples; neutrophils= 7 patients, 14 samples. Fastq files provided.

  Dataset EGAD00001006330

• Genome-wide array and mtDNA data Mercheros

  This dataset includes genome-wide autosomal array data and whole mtDNA sequences for 24 Merchero individuals.

  Dataset EGAD00001007763