Search Results - EGA European Genome-Phenome Archive

Genomic and transcriptomic profiling of carcinogenesis in patients with familial adenomatous polyposis

Whole-exome sequencing (WES) and whole-genome sequencing (WGS) were performed on matched adjacent normal tissues, multiregionally sampled adenomas at different stages and carcinomas from 5 patients with FAP and 1 patient with MUTYH-associated polyposis (MAP) (n=56 exomes; n=56 genomes; n=8,757 single cells).

Dataset EGAD00001005457

Raw sequencing data of PERMED-01 trial

Targeted sequencing (t-NGS) of frozen advanced cancers tissue was established with three panels covering 395 to 560 candidate cancer genes. Sequencing was done using the 2x150-bp paired-end technology on the Illumina MiSeq and NextSeq500 platforms. The DNA libraries of all coding exons were done with the HaloPlex Target Enrichment System (Agilent, Santa Clara, CA, USA).

Dataset EGAD00001006289

Anaplastic Thyroid Cancer aligned whole exome sequence data

Whole exome sequence data in fastq format was aligned to the GRCH38 reference genome. Aligned sequence was preprocessed with GATK for Indel Realignment and Base Quality Score Recalibration. Duplicates were marked with Picard Mark Duplicates. Aligned sequence is in bam format. Details of the alignment can be found in he bam header. Tumour samples were classified as Anaplastic Thyroid, Poorly-differentiated or well-differentiated cancers.

Dataset EGAD00001005791

SARS-CoV2 nasal epithelium

Single cell RNA sequence generated from human primary nasal epithelium differentiated at air-liquid interface. This dataset comprises tissue from two donors, with cultures either unexposed or exposed to SARS-CoV2. Libraries were prepared using the 10X Genomics pipeline as per manufacturer's instructions.

Dataset EGAD00001008159

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Genomic and transcriptomic profiling of carcinogenesis in patients with familial adenomatous polyposis

Raw sequencing data of PERMED-01 trial

Anaplastic Thyroid Cancer aligned whole exome sequence data

SARS-CoV2 nasal epithelium

Genome and transcriptome sequence data from a pancreatic adenocarcinoma patient

Genome and transcriptome sequence data from a pancreatic cancer patient

Genome and transcriptome sequence data from a metastatic rectal carcinoma patient

Genome and transcriptome sequence data from a metastatic choroid melanoma patient

Genome and transcriptome sequence data from a pancreatic cancer patient

Genome and transcriptome sequence data from a pancreatic ductal adenocarcinoma patient

Genome and transcriptome sequence data from a colorectal adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic breast cancer patient

Genome and transcriptome sequence data from a metastatic melanoma patient

Genome and transcriptome sequence data from a lung carcinoma patient

Genome and transcriptome sequence data from a pancreatic cancer patient

RNA-Seq data for Academic and For-Profit researchers.

Genome and transcriptome sequence data from a metastatic breast cancer patient

Genome and transcriptome sequence data from an endometrioid ovary carcinoma patient

Genome and transcriptome sequence data from a cholangiocarcinoma patient

Genome and transcriptome sequence data from a serous endometrial cancer patient

Genome and transcriptome sequence data from a pancreatic cancer patient

Genome and transcriptome sequence data from a breast cancer patient

Genome and transcriptome sequence data from a uveal melanoma patient

Genome and transcriptome sequence data from a metastatic pancreatic cancer patient