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• Cases_HCC

  A total of 87 microarrays from HCC patients treated with anti-PD1 inhibitors

  Dataset EGAD00010002255

• Exome sequencing of EBV-driven lymphoma

  Exome sequencing of a case of lethal EBV-driven LPD

  Dataset EGAD00001001347

• RNAseq for 8 PDX

  RNAseq for #111, #1177, #206, #201, #29, #931, WO-19, WO-2

  Dataset EGAD50000000116

• DATA FILES FOR PCGP MB WGS - Supersedes (EGAD00001000269)

  DATA FILES FOR PCGP MB WGS - Supersedes (EGAD00001000269)

  Dataset EGAD00001001864

• Linked-reads for Juvenile Pilocytic Astrocytomas

  Matched tumor-normal data for 6 JPAs. Generated using 10X Genomics Linked-reads

  Dataset EGAD00001011114

• Genomic determination for Homologous Recombination Deficiency (HRD) by shallow Whole Genome Sequencing (sWGS)

  Genomic determination for Homologous Recombination Deficiency (HRD) by shallow Whole Genome Sequencing (sWGS) with shallowHRD (PMID : 32315385) on 55 triple-negative breast cancer Patient Derived-Xenograft (PDX) treated with platinum.

  Study EGAS00001005926

• Exome and RNA sequencing data for Diffuse Large B Cell Lymphomas

  Exome sequencing data for 1001 DLBCL patients and RNA sequencing data for 775 DLBCL patients

  Dataset EGAD00001003600

• Sequencing data for Hepatoblastoma samples

  This dataset contains DNA sequencing data for twelve hepatoblastoma tumor samples, four of which have matched normals. Nine of the samples also have RNA sequencing data from the tumor sample. The dataset comprises six samples from patient tissues and six from cell lines; see metadata for details.

  Dataset EGAD00001006621

• Genome-wide genotype data for 1,433 ni-Vanuatu

  Here, we generated genome-wide genotype data for 1,433 contemporary ni-Vanuatu and assessed their fine-scale genetic structure, in order to address central questions about the settlement of western Remote Oceania.

  Study EGAS00001005910

• Clonal structure and oncogenic potential of liver cirrhosis tissues.

  Hepatocellular carcinoma (HCC) recurrently develops in cirrhotic liver composed of numbers of regenerative nodules (RNs). The biologic or genetic basis of RNs for hepatocarcinogenesis remains unclear at present. Thus, to uncover the basis of cirrhotic liver for multicentric tumorigenesis, we investigated the oncogenic potential of RNs in LC tissues using multi-omics analysis.

  Study JGAS000134

• Single nuclei ATAC-Seq data from the human ganglionic eminences

  We performed the single nuclei Assay for Transposase-Accessible Chromatin with Sequencing (snATAC-Seq) to map potential regulatory genomic regions operating in individual cell populations of the human GE, using these to test for enrichment of schizophrenia common genetic variant liability and to functionally annotate non-coding variants associated with the disorder.

  Study EGAS50000000411

• Mutator phenotype and specific mutational signature explain an increased risk of hematological malignancies in patients with Xeroderma Pigmentosum

  In this study we report for the first time the unique collection of 6 leukemias and two sarcomas from XP-C. Comprehensive WGS-based mutational analysis provides genetic explanation for the increased incidence of leukemia in XP-C and describes an unique mutational process in internal tumors associated with NER deficiency.

  Study EGAS00001004511

• Novel de novo pathogenic variant in the GNAI1 as a cause of severe disorders of intellectual development with autistic features

  Study EGAS00001005346

• Whole Exome Sequencing of Bipolar cases and matched controls performed at the Broad Institute on a cohort from Germany

  Study EGAS00001005858

• A cycling, progenitor-like cell population at the root of atypical teratoid rhabdoid tumor subtype differentiation trajectories

  Study EGAS00001008123

• Precise reconstruction of the tumor microenvironment using bulk RNA-seq and a unique machine learning-based algorithm trained on artificial transcriptomes

  Study EGAS00001006272

• Novel de novo pathogenic variant in the GNAI1 as a cause of severe disorders of intellectual development with autistic features

  Study EGAS00001005355

• transcriptome analysis of NK cells sorted from PBMCs at baseline and after addition of a T cell dependent bispecific antibody (TDB)

  Study EGAS00001006914

• EGAD00010000391

  Cambridge control samples using a 660K genotyping chip from Illumina

  Dataset EGAD00010000391

• Long read data generated for de novo assembly

  Long read data generated for de novo assembly (PacBio and ONT FASTQ files)

  Dataset EGAD50000002367

• MutWP1__CRUK_Grand_Challenge_Mutographs_of_Cancer__pancreas_LCM_

  Samples prepared by LCM - 5 cases for pilot study. Bulk DNA not available.

  Study EGAS00001003197

• Rhabdoid tumor sequencing data

  This study contains sequencing DNA and RNA sequencing data for rhabdoid tumors

  Study EGAS00001006351

• Dataset for "Genomic landscape of oral cancers" (Illumina RNA)

  Dataset for "Genomic landscape of oral cancers" (Illumina RNA)

  Dataset EGAD00001004366

• DATA FILES FOR SJRB

  DATA FILES FOR SJRB

  Dataset EGAD00001001045

• ChIPseq Sequencing data for epigenetic subgroups of meningioma

  Bam files for 16 meningioma tumor samples; ChIPseq performed on Illumina HiSeq 2000

  Dataset EGAD00001005021