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Study type

affected sib pairs aggregate genomic data cancer genomics case set case-cohort case-control clinical cohort clinical diagnostic testing clinical genetic testing clinical trial cohort collection community control set copy number variation (cnv) cross-sectional double-blind electronic medical records epigenetics eqtl exome sequencing extended pedigrees family family linkage full transcriptome sequencing gene regulation study genotype genotype/expression genotype/expression array gwas individual-level genomic data interventional longitudinal longitudinal cohort marker discovery meta-analysis metagenomics metastasis methods development mixed multicenter multiplex families nested case-control nuclear families observational other parent-offspring parent-offspring trios partial factorial randomized phase iii placebo-controlled pooled clone sequencing population population genomics population-based control set probands prospective quantitative cross-sectional randomized randomized controlled clinical trial reference set resequencing rna sequencing rnaseq sequencing sibling cohort single cell analysis single patient snp array analysis stem cell lines synthetic genomics transcriptome analysis transcriptome sequencing transcriptome sequencing (tumor only) tumor tumor vs. matched-normal twin virus capture sequencing whole genome sequencing xenograft

Dataset types

amplicon sequencing chip-seq chromatin accessibility profiling by high-throughput sequencing exome sequencing genomic variant calling genotyping by array histone modification profiling by high-throughput sequencing methylation binding domain sequencing methylation profiling by high-throughput sequencing phenotype information study summary information transcriptome profiling by array transcriptome profiling by high-throughput sequencing whole genome sequencing

Dataset technologies

ab 3730xl genetic analyzer ab solid 4 system ab solid system ab solid system 3.0 affymetrix 6.0 array bgiseq-500 complete genomics dnbseq-g400 dnbseq-t7 flow-injection tof-m spectrometry. gencove gridion hiseq x five hiseq x ten human clariom d arrays humanht-12 illumina illumina epic v2.0 illumina genome analyzer illumina genome analyzer ii illumina genome analyzer iix illumina global screening array v2.0 illumina hiscan illumina hiscansq illumina hiseq 1500 illumina hiseq 2000 illumina hiseq 2500 illumina hiseq 3000 illumina hiseq 4000 illumina hiseq x illumina hiseq4000 illumina humancoreexome beadchip array illumina humancoreexome-24v1-0 illumina humancoreexome-24v1-1 illumina humanimmuno v1.0 illumina infinium coreexome-24 illumina infinium methylationepic beadchip (850 k) illumina iscan illumina iselect illumina iseq 100 illumina mega array illumina miseq illumina nextseq-500 illumina novaseq 6000 illumina novaseq x illumina novaseq x plus ilumina infinium humanmethylationepic beadchip array infinium cytosnp-850k v1.4 bead chips array, illumina infinium gsa infiniumomniexpress-24v1-2_a1 ion torrent proton ion torrent s5 ion torrent s5 xl life tech - solid llumina 2.5-8 low pass whole genome sequencing (lp-wgs) minion nanostring technology nextseq 1000 nextseq 2000 nextseq 500 nextseq 550 omniexpress omniexpress-24 v1.1 pacbio rs pacbio rs ii promethion revio sequel sequel ii sequel iie thermofisher scientific clariomtm d pico assay unknown humanomni2-5-8-v1-1-c unknown humanomni25-8v1-1 unknown humanomni25m-8v1-1 unspecified

Phenotypes

CL:0000037 CL:0000049 CL:0000050 CL:0000051 CL:0000096 CL:0000557 CL:0000560 CL:0000576 CL:0000625 CL:0000765 CL:0000837 CL:0002026 CL:0002092 EFO:0000001 EFO:0000094 EFO:0000174 EFO:0000196 EFO:0000198 EFO:0000209 EFO:0000220 EFO:0000222 EFO:0000228 EFO:0000248 EFO:0000289 EFO:0000309 EFO:0000313 EFO:0000339 EFO:0000349 EFO:0000403 EFO:0000437 EFO:0000502 EFO:0000519 EFO:0000538 EFO:0000621 EFO:0000637 EFO:0000691 EFO:0000730 EFO:0000760 EFO:0000980 EFO:0001376 EFO:0002394 EFO:0002422 EFO:0002429 EFO:0002508 EFO:0002885 EFO:0002886 EFO:0002887 EFO:0002888 EFO:0002889 EFO:0002890 EFO:0002891 EFO:0002892 EFO:0002918 EFO:0002933 EFO:0002937 EFO:0002939 EFO:0003025 EFO:0003137 EFO:0003761 EFO:0004708 EFO:0004890 EFO:0004905 EFO:0005168 EFO:0005235 EFO:0005543 EFO:0005701 EFO:0005740 EFO:0007143 EFO:0008498 EFO:0008524 EFO:0009052 EFO:0009119 EFO:0009121 EFO:1000028 EFO:1000042 EFO:1000043 EFO:1000075 EFO:1000138 EFO:1000139 EFO:1000149 EFO:1000231 EFO:1000238 EFO:1000292 EFO:1000388 EFO:1000414 EFO:1000416 EFO:1000575 EFO:1001230 EFO:1001480 EFO:1001514 EFO:1001515 EFO:1001830 EFO:1001950 EFO:1001958 EFO:1001963 HP:0000028 HP:0000122 HP:0000138 HP:0000160 HP:0000175 HP:0000194 HP:0000201 HP:0000219 HP:0000248 HP:0000268 HP:0000272 HP:0000286 HP:0000307 HP:0000311 HP:0000316 HP:0000331 HP:0000343 HP:0000347 HP:0000356 HP:0000358 HP:0000403 HP:0000405 HP:0000431 HP:0000463 HP:0000474 HP:0000486 HP:0000490 HP:0000494 HP:0000506 HP:0000519 HP:0000527 HP:0000535 HP:0000572 HP:0000582 HP:0000588 HP:0000664 HP:0000708 HP:0000713 HP:0000722 HP:0000729 HP:0000735 HP:0000736 HP:0000739 HP:0000750 HP:0000752 HP:0000767 HP:0000787 HP:0000817 HP:0000871 HP:0000921 HP:0000939 HP:0000953 HP:0000954 HP:0000957 HP:0000978 HP:0001028 HP:0001053 HP:0001182 HP:0001249 HP:0001250 HP:0001252 HP:0001256 HP:0001263 HP:0001270 HP:0001328 HP:0001380 HP:0001382 HP:0001508 HP:0001510 HP:0001513 HP:0001622 HP:0001629 HP:0001631 HP:0001642 HP:0001643 HP:0001782 HP:0001800 HP:0001824 HP:0001845 HP:0001848 HP:0001863 HP:0001864 HP:0001999 HP:0002013 HP:0002019 HP:0002020 HP:0002061 HP:0002123 HP:0002194 HP:0002208 HP:0002211 HP:0002232 HP:0002236 HP:0002307 HP:0002317 HP:0002353 HP:0002465 HP:0002474 HP:0002574 HP:0002705 HP:0002714 HP:0002757 HP:0002779 HP:0002926 HP:0003121 HP:0003186 HP:0003196 HP:0003808 HP:0004322 HP:0004325 HP:0004349 HP:0004370 HP:0004474 HP:0004482 HP:0005180 HP:0005487 HP:0005831 HP:0006934 HP:0006986 HP:0007328 HP:0007544 HP:0007663 HP:0007970 HP:0008115 HP:0008551 HP:0008734 HP:0008935 HP:0009927 HP:0009933 HP:0010562 HP:0010743 HP:0010862 HP:0010863 HP:0011090 HP:0011123 HP:0011220 HP:0011311 HP:0011344 HP:0011645 HP:0011800 HP:0011924 HP:0011968 HP:0012189 HP:0012382 HP:0012450 HP:0012745 HP:0030055 HP:0030190 HP:0030276 HP:0040019 HP:0040199 HP:0100033 HP:0100559 HP:0100728 HP:0100814 MONDO:0001056 MONDO:0002601 MONDO:0002627 MONDO:0002630 MONDO:0002631 MONDO:0003142 MONDO:0003537 MONDO:0003572 MONDO:0005575 MONDO:0006058 MONDO:0007254 MONDO:0008170 MONDO:0008903 MONDO:0016690 MONDO:0016691 MONDO:0016700 MONDO:0016735 MONDO:0017387 MONDO:0019474 MONDO:0020511 NCIT:C177374 NCIT:C25588 Orphanet:124 Orphanet:252202 Orphanet:269 Orphanet:3095 Orphanet:399 Orphanet:654 Orphanet:768 Orphanet:811 PATO:0000461 UBERON:0000992 UBERON:0002371 UBERON:0003889 UBERON:0012168 UBERON:0013756

Duo

0000001 0000004 0000005 0000006 0000007 0000011 0000012 0000014 0000015 0000016 0000017 0000018 0000019 0000020 0000021 0000022 0000024 0000025 0000026 0000027 0000028 0000029 0000042 0000043 0000044 0000045 0000046

Clear

The Genomic Map of Polad in Open Access

The main goal is to prepare and share WGS/WES of Polish population
Study EGAS50000000112
The Genomic Map of Polad in Open Access

The main goal is to prepare and share WGS/WES of Polish population
Study EGAS50000000111
The Genomic Map of Polad in Open Access

The main goal is to prepare and share WGS/WES of Polish population
Study EGAS50000000110
WGS of 78 FL tumour normal pairs

This dataset is the second batch of WGS uploaded from FL GenomeCanada data. The other batch is in EGAD00001011343
Dataset EGAD50000000253
RNA sequencing study for 8 pairs of primary NSCLCs and distant metastases

This study is to understand of the molecular mechanisms driving metastasis.
Study EGAS00001004078
Crohn_s_Exome_Sequencing

The aim is to find rare variants of intermediate penetrance in those at risk of Crohn's disease
Study EGAS00001000385
Liver_Tumours_WGS

The aim of this study is to define the mutational landscape of human liver tumours.
Study EGAS00001003446
Orphan_Tumour_Study___RNAseq

The aim of this study is to study the genomes of ultra rare childhood tumours
Study EGAS00001002534
Whole exome sequencing study for 8 pairs of primary NSCLCs and distant metastases

This study is to understand of the molecular mechanisms driving metastasis.
Study EGAS00001004077
Whole_Genome_sequencing_of_rhabdomyosarcoma_tumour_tissue

The aim of this study is to investigate the genomic landscape of human cancer.
Study EGAS00001008277

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