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• H005 RNA-seq CLL

  Paired-end RNA sequencing using total RNA from 136 primary lymphoma samples. Sequencing was performed on the Illumina HiSeq2000 with 300bp insert size. The dataset contains FASTQ files.

  Dataset EGAD00001002056

• Copy number profiles detected by shallow coverage WGS

  We performed shallow coverage whole genome sequencing on 147 glioma samples and analyzed their copy number profile. The coverage of each sample is about 2. Data are presented as VCF files which describe the copy number segments and their log2 ratio.

  Dataset EGAD00001005062

• sWGS of CTCL patients

  Paired end shallow whole genome sequencing (sWGS) data for the identification of somatic copy number alterations (SCNA) and the estimation of tumor fraction and ploidy sorted malignant CD3+/Vb+ T-cells and corresponding CD19+ non-malignant B-cells

  Dataset EGAD00001006901

• Breast Cancer TNBC Single-Cell RNA-Seq Dataset

  Single-cell RNA-Sequencing of five TNBC primary breast cancers from Wu et al. (2020) EMBO J study. Data was generated using the Chromium controller (10X Genomics) and sequenced on the NextSeq 500 platform.

  Dataset EGAD00001006981

• Pilocytic Astrocytoma RNA sequencing

  This dataset contains RNA sequencing samples from the Duesseldorf/LIsbon pilocytic astrocytoma cohort which was profiled using Proteogenomics (RNA Sequencing, proteomics and methylation). There are 48 samples which were sequenced using paired-end sequencing at the University Hopstial Dusseldorf.

  Dataset EGAD00001009053

• Characterizing the tumor immune microenvironment of ependymomas using targeted gene expression profiles and RNA-sequencing the pros and cons

  RNA sequencing data of a collection of 6 pediatric ependymoma cases

  Dataset EGAD00001009301

• IsoSeq Subreads bam files (PacBio)

  These are the raw subreads bam files for the pacbio IsoSeq data

  Dataset EGAD00001009514

• RNASeq

  The cohort comprised of 48 pediatric patients with 21 different relapsed or refractory solid neoplasms. This cohort was analysed by RNASeq. The corresponding datasets contains fasq files.

  Dataset EGAD00001010041

• RNA sequencing data from the lungNENomics project

  Raw RNA-seq data from the lungNENomics cohort, comprising 319 pairs of FASTQ files from 179 individuals. This dataset also includes a gene count matrix, gene TPM matrix and gene expression VST matrix from 244 samples.

  Dataset EGAD00001015524

• Dataset for "CutNRun" sequencing of 12 samples of patients with colorectal cancer

  This dataset contains 12 "CutNRun" sequencing samples of patients with colorectal cancer. The sequencing was performed on Illumina NextSeq 550 using Cell Signaling TechnologyDNA Library Prep _Kit for Illumina Systems. The sequencing was always paired.

  Dataset EGAD00001015694