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• Single cell whole genome sequencing of 5 ovarian cancer specimens

  Single cell whole genome sequencing BAM files for five ovarian cancer specimens.

  Study EGAS50000001458

• single cell RNA sequencing for healthy controls and patients having NFATc1 deficiency

  single cell RNA sequencing for 4 healthy controls and 2 patients having NFATc1 deficiency

  Dataset EGAD00001011044

• Thymic epithelial transplantation for complete DiGeorge syndrome: RNA (2025-10-02)

  Single cell transcriptomics study of thymic transplant biopsies . This dataset contains all the data available for this study on 2025-10-02.

  Dataset EGAD00001015721

• Genotype-Tissue Expression (GTEx) (2025-07-28)

  Dual snRNAseq and ATACseq of replicate PBMC samples for 10X beta testing. . This dataset contains all the data available for this study on 2025-07-28.

  Dataset EGAD00001015663

• WGS files for SJMDS

  WGS files for SJMDS paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes'

  Dataset EGAD00001003156

• WES files for SJMDS

  WES files for SJMDS paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes'

  Dataset EGAD00001003155

• WES files for CHEN WTPDX WES

  WES files for CHEN WTPDX paper titled "Forty-Five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor"

  Dataset EGAD00001004506

• VALCAP files for Ma et al. (2019) SCMC Hybrid

  VALCAP files for Ma et al. (2019) Genome Biology (accepted) titled “Analysis of error profiles in deep next-generation sequencing data"

  Dataset EGAD00001004595

• McGill EMC Release 4 in tissue "venous blood" for cell type "T cell"

  McGill EMC Release 4 in tissue "venous blood" for cell type "T cell"

  Dataset EGAD00001001283

• McGill EMC Release 4 in tissue "fat pad" for cell type "fat cell"

  McGill EMC Release 4 in tissue "fat pad" for cell type "fat cell"

  Dataset EGAD00001001277

• McGill EMC Release 4 in tissue "venous blood" for cell type "B cell"

  McGill EMC Release 4 in tissue "venous blood" for cell type "B cell"

  Dataset EGAD00001001278

• Dataset for "Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability"

  Dataset for "Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability"

  Dataset EGAD00001000691

• ONT Minion reads for a patient with ataxia-pancytopenia syndrome.

  ONT Minion reads to provide 30x coverage for a patient with ataxia-pancytopenia syndrome.

  Dataset EGAD00001005022

• Exome and Transcriptome for gynecologic cancer gene-drug analysis

  Total of 180 gynecologic tumor specimens were subjected for targeted-exome and/or whole-transcriptome sequencing.

  Dataset EGAD00001005331

• ChIP-seq for AR, FOXA1 and HOXB13 on 8 prostectomy samples

  ChIP-seq for AR, FOXA1 and HOXB13 on 8 prostectomy samples, both regions with/-out tumor cells, Fastq files.

  Dataset EGAD00001005374

• Exome and Transcriptome for gastric cancer gene-drug analysis

  Newly generated 52 gastric tumor specimens were subjected for targeted-exome and/or whole-transcriptome sequencing

  Dataset EGAD00001005766

• WGS data for Glioblastoma (EGAS00001003953, H016)

  Whole genome sequencing data for 20 human glioblastoma patients.

  Dataset EGAD00001006545

• IMpower133 processed RNA-seq data whole transcriptome

  This dataset contains log2(TPM + 1) for 271 tumor samples profiled by RNA-seq for the entire transcriptome.

  Dataset EGAD00001006927

• WGS files for Roussel-ATRT-TM

  WGS files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"

  Dataset EGAD00001009163

• RNASeq files for CIC paper data

  RNASeq files for CIC paper titled "Malignant progression of an ancestral bone marrow clone harboring a CIC-NUTM2A fusion in isolated myeloid sarcoma"

  Dataset EGAD00001009788

• RRBS for Patients of NIBIT-M4 clinical trial

  RRBS for Patients of NIBIT-M4 clinical trial

  Dataset EGAD00001009703

• Additional WGS files for Roussel-ATRT-TM

  Additional WGS files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"

  Dataset EGAD00001010264

• Additional WXS files for Roussel-ATRT-TM

  Additional WXS files for Roussel-ATRT-TM paper titled "Atypical teratoid/ rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities"

  Dataset EGAD00001010265

• The National Institute of Neurological Disorders and Stroke (NINDS) Stroke Genetics Network (SiGN)

  The NINDS Stroke Genetics Network (SiGN) is a large international collaboration designed to detect genetic variants that predispose to subtypes of ischemic stroke. The study implements a genome wide association study (GWAS) methodology with all stroke cases undergoing phenotypic and stroke-subtype classification using the same web-based Causative Classification of Stroke (CCS) system, with data entered by trained and certified adjudicators at participating Research Centers (GRC's). SiGN includes ischemic stroke cases from 24 GRC's, 13 from the US and 11 from Europe. Each GRC has access to well-characterized ischemic stroke cases in which extensive phenotype data and high-quality DNA was available. Genome-wide data was available for many cases and for those without, new genome-wide genotyping, including exome chip genotyping of rare variants, was done through the Center for Inherited Diseases Research (CIDR). To maximize power for subtype analyses, genotyping resources were allocated almost exclusively to cases. With few exceptions, controls were drawn from studies with publicly available genome-wide data.

  Study phs000615

• The Northern Manhattan Family Study - a Sub-Study of the Epidemiologic Study of Stroke Outcome in 3 Ethnic Groups: The Northern Manhattan Study

  The Northern Manhattan Family Study is a sub-study of the Northern Manhattan Study (NOMAS), a population-based cohort study investigating stroke and stroke risk factors among individuals from three ethnic groups residing in northern Manhattan. The overall goal for the Northern Manhattan Family Study was to determine the genetic factors associated with stroke precursor phenotypes. A subset of Caribbean Hispanic probands from the NOMAS Study were selected for inclusion in the family study. Selected probands were at high risk for cardiovascular disease, defined as either 1. Having a sibling with a history of myocardial infarction or stroke, or 2. Having two of the following three risk phenotypes above the 75th percentile in NOMAS; maximal carotid plaque thickness, left ventricular mass or homocysteine level. Probands for the family study were enrolled in northern Manhattan and family members were enrolled at two locations: New York at Columbia University and in the Dominican Republic (DR) at the Clinicas Corazones Unidos in Santo Domingo. A subset of Caribbean Hispanic NOMAS participants were included as a replication sample.

  Study phs002406