Study
Genome-wide mutation analysis of germinal-center B-cell derived lymphomas within the ICGC MMML-Seq Consortium
| Study ID | Alternative Stable ID | Type |
|---|---|---|
| EGAS00001000394 | Other |
Study Description
Germinal-center B-cell derived lymphomas (GCB-lymphomas) are the most common B-cell lymphomas in children and adults, with Burkitt Lymphomas (BL) predominating in childhood and follicular lymphoma (FL) and diffuse large B-cell lymphomas (DLBCL) predominating in older age groups. The cell-of-origin in all these lymphomas is supposed to be a germinal center B-cell and transformation of FL in DLBCL or intermediate DLBCL/BL (intL) can occur. In the framework of the German ICGC MMML-Seq we are currently exploring sequencing data of GCB-lymphomas and paired normal controls as well as normal B-cell subsets separated by FACS. This includes whole genome, transcriptome, miRNAome and whole methylome datasets.
Study Datasets 11 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001000278 |
ICGC MMML-seq Data Freeze November 2012 whole genome sequencing
|
Illumina HiSeq 2000 | 12 |
| EGAD00001000279 |
ICGC MMML-seq Data Freeze November 2012 whole exome sequencing
|
Illumina Genome Analyzer IIx | 4 |
| EGAD00001000281 |
ICGC MMML-seq Data Freeze November 2012 transcriptome sequencing
|
Illumina HiSeq 2000 | 6 |
| EGAD00001000355 |
ICGC MMML-seq Data Freeze March 2013 whole genome sequencing
|
Illumina HiSeq 2000 | 46 |
| EGAD00001000356 |
ICGC MMML-seq Data Freeze March 2013 transcriptome sequencing
|
Illumina HiSeq 2000 | 23 |
| EGAD00001000645 |
ICGC MMML-seq Data Freeze July 2013 whole genome sequencing
|
42 | |
| EGAD00001000648 |
ICGC MMML-seq Data Freeze July 2013 transcriptome sequencing
|
31 | |
| EGAD00001000650 |
ICGC MMML-seq Data Freeze July 2013 miRNA sequencing
|
52 | |
| EGAD00001001619 |
miRNA seq data of 43 cases out of dataset EGAD00001000650 (MMML)
|
43 | |
| EGAD00010000377 |
DNA methylation analysis of 6 primary lymphoma samples
|
HumanMethylation450k Bead Chip - Genome Studio | 6 |
| EGAD00010000379 |
DNA methylation analysis of 2 peripheral blood samples
|
HumanMethylation450k Bead Chip - Genome Studio | 2 |
Who archives the data?
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