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Data Access Committee of divisions B060 and B062, German Cancer Research Center (DKFZ)

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DKTK DAC
daco-dkfz-b06x@dkfz-heidelberg.de

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This DAC controls 19 datasets

Dataset ID	Description	Technology	Samples
EGAD00001000174	DATA_SET_Coverage_bias_sensitivity_of_variant_calling_for_4_WG_seq_tech	AB SOLiD 4 System Complete Genomics Illumina HiSeq 2000 unspecified	4
EGAD00001000963	Exome sequencing of sporadic schwannomatosis patients		16
EGAD00001000964	Low-coverage whole genome sequencing of sporadic schwannomatosis patients		16
EGAD00001003230	Small RNA expression profiles of the blood plasma-derived exosomes from B-cell chronic lymphocytic leukemia patients	Illumina HiSeq 2000	3
EGAD00001003429	RNA analysis of two patients 11 and 15 with WGS done on Illumina HiSeq2000. For research purpose and authorised user only.	Illumina HiSeq 2000	2
EGAD00001003430	RNA analysis of six patients 34, 35, 36, 37, 38 and 39 with WGS done on Illumina HiSeq2500. For research purpose and authorised user only.	Illumina HiSeq 2500	6
EGAD00001003436	Seven files of patients 3, 21, 29, 30, 31, 32 and 33 with WGS done on Illumina MiSeq with high coverage. For research purpose and authorised user only.	Illumina MiSeq	7
EGAD00001003437	Fourteen files of patients 1, 2, 4, 6, 7, 8, 9, 12, 14, 16, 17, 18, 19 and 27 with WGS done on Illumina MiSeq with low coverage. For research purpose and authorised user only.	Illumina MiSeq	14
EGAD00001003438	Three files of patients 20, 23 and 25 with WGS done on Illumina HiSeq 2000. For research purpose and authorised user only.	Illumina HiSeq 2000	3
EGAD00001003439	Three files of patients 10, 11 and 13 with WGS done on Illumina HiSeq X Ten. For research purpose and authorised user only.	HiSeq X Ten	3
EGAD00001003440	One file of patient 16 with WGS done on Illumina HiSeq X-Ten. For research purpose and authorised user only.	HiSeq X Ten	1
EGAD00001003544	Whole exome sequencing data to 30 PDOX models (28 early passages, 3 late passages (1 overlap)), 3 cell lines, and 20 matching human tumors	Illumina HiSeq 2000 Illumina HiSeq 4000	53
EGAD00001003545	Low-coverage whole genome sequencing data for 30 PDOX models (28 early passages, 4 late passages (2 overlaps)), 3 cell lines, and 21 matching human tumors	Illumina HiSeq 2000	56
EGAD00001003573	RNA sequencing data for the PDOX model EPD-613FH	Illumina HiSeq 2500	1
EGAD00001003940	This dataset contains whole genome sequencing data from 24 patients. For each patient a tumour and control sample has been sequenced on a Illumina HiSeq2000 instrument in paired-end mode. Up to three lanes per sample have been sequenced resulting in 112 Fastq files.	Illumina HiSeq 2000	48
EGAD00001003966	This dataset conatains RNA sequencing data from 24 patients. Up to two lanes per tumour sample have been seqeunced on a Illumina HiSeq2000 instrument in paired-end mode resulting in 58 Fastq files.	Illumina HiSeq 2000	24
EGAD00001003973	This dataset contains whole exome sequencing data from 24 patients. The Agilent SureSelect Human All Exon 50-Mb target enrichment kit was used to capture all human exons for deep sequencing. For each patient a tumour and control sample has been sequenced on a Illumina HiSeq2000 instrument in paired-end mode. Up to three lanes per sample have been sequenced resulting in 118 Fastq files.	Illumina HiSeq 2000	-
EGAD00001003979	This dataset contains ChIP sequencing data from 24 patients. ChIP of 5–10 mg flash-frozen primary ependymoma tumour was performed using 5 mg H3K27ac antibody per ChIP experiment. The enriched DNA has been sequenced on a Illumina HiSeq2000 instrument in paired-end mode. Up to two lanes per sample have been sequenced resulting in 70 Fastq files.	Illumina HiSeq 2000	-
EGAD00001005021	Bam files for 16 meningioma tumor samples; ChIPseq performed on Illumina HiSeq 2000	Illumina HiSeq 2000	16