DAC

Data Access Committee of divisions B060 and B062, German Cancer Research Center (DKFZ)

Dac ID Contact Person Email Access Information
EGAC00001000219 DACO B060x daco-dkfz-b06x [at] dkfz-heidelberg [dot] de No additional information is available

This DAC controls 15 datasets:

Dataset ID Description Technology Samples
EGAD00001000174 DATA_SET_Coverage_bias_sensitivity_of_variant_calling_for_4_WG_seq_tech AB SOLiD 4 System,Complete Genomics,Illumina HiSeq 2000,unspecified 4
EGAD00001000963 Exome sequencing of sporadic schwannomatosis patients 16
EGAD00001000964 Low-coverage whole genome sequencing of sporadic schwannomatosis patients 16
EGAD00001003230 Small RNA expression profiles of the blood plasma-derived exosomes from B-cell chronic lymphocytic leukemia patients Illumina HiSeq 2000 3
EGAD00001003429 RNA analysis of two patients 11 and 15 with WGS done on Illumina HiSeq2000. For research purpose and authorised user only. Illumina HiSeq 2000 2
EGAD00001003430 RNA analysis of six patients 34, 35, 36, 37, 38 and 39 with WGS done on Illumina HiSeq2500. For research purpose and authorised user only. Illumina HiSeq 2500 6
EGAD00001003436 Seven files of patients 3, 21, 29, 30, 31, 32 and 33 with WGS done on Illumina MiSeq with high coverage. For research purpose and authorised user only. Illumina MiSeq 7
EGAD00001003437 Fourteen files of patients 1, 2, 4, 6, 7, 8, 9, 12, 14, 16, 17, 18, 19 and 27 with WGS done on Illumina MiSeq with low coverage. For research purpose and authorised user only. Illumina MiSeq 14
EGAD00001003438 Three files of patients 20, 23 and 25 with WGS done on Illumina HiSeq 2000. For research purpose and authorised user only. Illumina HiSeq 2000 3
EGAD00001003439 Three files of patients 10, 11 and 13 with WGS done on Illumina HiSeq X Ten. For research purpose and authorised user only. HiSeq X Ten 3
EGAD00001003440 One file of patient 16 with WGS done on Illumina HiSeq X-Ten. For research purpose and authorised user only. HiSeq X Ten 1
EGAD00001003940 This dataset contains whole genome sequencing data from 24 patients. For each patient a tumour and control sample has been sequenced on a Illumina HiSeq2000 instrument in paired-end mode. Up to three lanes per sample have been sequenced resulting in 112 Fastq files. Illumina HiSeq 2000 48
EGAD00001003966 This dataset conatains RNA sequencing data from 24 patients. Up to two lanes per tumour sample have been seqeunced on a Illumina HiSeq2000 instrument in paired-end mode resulting in 58 Fastq files. Illumina HiSeq 2000 24
EGAD00001003973 This dataset contains whole exome sequencing data from 24 patients. The Agilent SureSelect Human All Exon 50-Mb target enrichment kit was used to capture all human exons for deep sequencing. For each patient a tumour and control sample has been sequenced on a Illumina HiSeq2000 instrument in paired-end mode. Up to three lanes per sample have been sequenced resulting in 118 Fastq files. Illumina HiSeq 2000 48
EGAD00001003979 This dataset contains ChIP sequencing data from 24 patients. ChIP of 5–10 mg flash-frozen primary ependymoma tumour was performed using 5 mg H3K27ac antibody per ChIP experiment. The enriched DNA has been sequenced on a Illumina HiSeq2000 instrument in paired-end mode. Up to two lanes per sample have been sequenced resulting in 70 Fastq files. Illumina HiSeq 2000 24