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Woodcock et al TenMenDeep Study EGA Dataset A

Woodcock et al TenMenDeep EGA Dataset A. These are Illumina based deep sequencing data based on bait capture sequencing. See Woodcock et al methods for more detail. Note: the Amplicon sequencing data type is selected because the EGA Website currently has no option to select Bait Capture Sequencing or similar.

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Data are available to qualified researchers providing a signed Data Access Agreement for Institutions, and an Application for Access to specific PELICAN Study Data.

PELICAN Integrated Clinical-Molecular Autopsy Study of Prostate Cancer Data access agreement for institutions This agreement governs the terms on which access will be granted to the genomic and clinical data for the PELICAN Integrated Clinical-Molecular Study of Prostate Cancer generated by the Prostate Cancer Research Center, Tampere University. In signing this agreement, You agree to be bound by the terms and conditions of access set out in this agreement. For the sake of clarity, the terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You”. Definitions: PCRC means the Prostate Cancer Research Center, a research group operating at Tampere University, Tampere, Finland. Data means any human genetic, genomic, or clinical data obtained from the Prostate Cancer Research Center. Data Subject means a person to whom Data refers and who consented to participate in the PELICAN integrated clinical-molecular study of prostate cancer. User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. User Institution means the organization at which the User is employed, affiliated or enrolled. Terms and Conditions: In signing this Agreement: 1. You agree to use the Data only for the advancement of medical research. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator in the same Institution, the third party must make a separate application for access to the Data and get the specific authorization. You will delete all copies of the Data when you no longer require the Data or the permission period has expired. 4. You agree to use the data only for the approved purpose and project described in your application and to abide by any consent conditions described as approval codes; use of the Data for a new purpose or project will require a new application and prior express approval. 5. You accept that Data may be reissued from time to time, with suitable versioning. If the reissue is at the request of sample donors and/or other ethical scrutiny, You will destroy earlier versions of the Data. 6. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the data, and the role of PCRC and the relevant primary collectors and their funders. 7. You accept that the PCRC, the original data creators, depositors or copyright holders, or the funders of the Data or any part of the Data supplied: a. bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b. accept no liability for direct, indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 8. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media is not permitted. 9. You recognize that nothing in this agreement shall operate to transfer to the User Institution any intellectual property rights relating to the Data. The User Institution has the right to develop intellectual property based on comparisons with their own data. 10. You will company with all ethical and legal regulatory requirements applicable in Your Institution and country/region in Your use of Data. 11. You accept that this agreement will terminate immediately upon any breach of this agreement by You and You will be required to destroy any Data held. 12. You accept that it may be necessary for PCRC or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, Tampere University or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the agreement. 13. You accept that the Data is protected by and subject to international laws, including but not limited to the European Union (EU) General Data Protection Regulation (Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 on the protection of natural persons with regard to the processing of personal data and on the free movement of such data, and repealing EC Directive 95/46/EC), and that You are responsible for ensuring compliance with any such applicable law. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the European Economic Area. 14. This agreement shall be construed, interpreted and governed by the laws of Finland and shall be subject to the non-exclusive jurisdiction of the Finnish courts. Print Full Name and title: ________________________________________ Signature:___________________________________________________ Institution and Address:___________________________________________ Today’s Date:_________________________________________________ Email address:_________________________________________________ Application for Access to specific PELICAN Study Data Name of applicant and co-applicant(s), including affiliations and contact details. Please ensure that a full postal and email address is included for each applicant. PhD student applicants must include their supervisors as a co-applicant and provide their full contact details. Title of Project In less than 30 words. Data Requested Please indicate which data you require. Research Question Please provide a clear description of the project and its specific aims in no more than 750 words. This should include specific details of what you plan to do with the data and include key references. Feasibilty Please describe fully your experience and expertise, and that of your collaborators, and how this will be applied to the proposed study. A publication list MUST be provided for the applicant, co-applicants and PhD supervisors where PhD students have applied. The committee needs assurance of competence in handling datasets of this size and nature. I have read and agree to abide by the terms and conditions specified in the Data Access Agreement, Yes___ No___

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003848 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002737437 fastq.gz 2.2 GB
EGAF00002737438 fastq.gz 2.3 GB
EGAF00002737439 fastq.gz 4.3 GB
EGAF00002737440 fastq.gz 4.4 GB
EGAF00002737441 fastq.gz 3.5 GB
EGAF00002737442 fastq.gz 3.6 GB
EGAF00002737443 fastq.gz 1.8 GB
EGAF00002737444 fastq.gz 1.9 GB
EGAF00002737445 fastq.gz 2.1 GB
EGAF00002737446 fastq.gz 2.3 GB
EGAF00002737449 fastq.gz 1.2 GB
EGAF00002737450 fastq.gz 1.3 GB
EGAF00002737451 fastq.gz 1.2 GB
EGAF00002737452 fastq.gz 1.2 GB
EGAF00002737453 fastq.gz 1.7 GB
EGAF00002737454 fastq.gz 1.7 GB
EGAF00002737457 fastq.gz 2.2 GB
EGAF00002737458 fastq.gz 2.3 GB
EGAF00002737459 fastq.gz 2.0 GB
EGAF00002737460 fastq.gz 2.2 GB
EGAF00002737461 fastq.gz 1.6 GB
EGAF00002737462 fastq.gz 1.7 GB
EGAF00002737463 fastq.gz 2.5 GB
EGAF00002737464 fastq.gz 2.5 GB
EGAF00002737465 fastq.gz 3.3 GB
EGAF00002737466 fastq.gz 3.3 GB
EGAF00002737469 fastq.gz 1.3 GB
EGAF00002737470 fastq.gz 1.4 GB
EGAF00002737473 fastq.gz 4.4 GB
EGAF00002737474 fastq.gz 4.5 GB
EGAF00002737475 fastq.gz 1.1 GB
EGAF00002737476 fastq.gz 1.1 GB
EGAF00002737477 fastq.gz 2.1 GB
EGAF00002737478 fastq.gz 2.2 GB
EGAF00002737479 fastq.gz 1.8 GB
EGAF00002737480 fastq.gz 1.9 GB
EGAF00002737481 fastq.gz 2.3 GB
EGAF00002737482 fastq.gz 2.3 GB
EGAF00002737485 fastq.gz 2.2 GB
EGAF00002737486 fastq.gz 2.3 GB
EGAF00002737487 fastq.gz 1.5 GB
EGAF00002737488 fastq.gz 1.5 GB
EGAF00002737489 fastq.gz 1.8 GB
EGAF00002737490 fastq.gz 1.9 GB
EGAF00002737491 fastq.gz 1.8 GB
EGAF00002737492 fastq.gz 1.8 GB
EGAF00002737493 fastq.gz 2.1 GB
EGAF00002737494 fastq.gz 2.2 GB
EGAF00002737495 fastq.gz 1.3 GB
EGAF00002737496 fastq.gz 1.4 GB
EGAF00002737499 fastq.gz 2.0 GB
EGAF00002737500 fastq.gz 2.1 GB
EGAF00002737505 fastq.gz 2.1 GB
EGAF00002737506 fastq.gz 2.2 GB
EGAF00002737511 fastq.gz 1.6 GB
EGAF00002737512 fastq.gz 1.7 GB
EGAF00002737513 fastq.gz 2.6 GB
EGAF00002737514 fastq.gz 2.7 GB
EGAF00002737515 fastq.gz 1.6 GB
EGAF00002737516 fastq.gz 1.7 GB
EGAF00002737517 fastq.gz 2.2 GB
EGAF00002737518 fastq.gz 2.2 GB
EGAF00002737519 fastq.gz 1.3 GB
EGAF00002737520 fastq.gz 1.3 GB
EGAF00002737521 fastq.gz 1.8 GB
EGAF00002737522 fastq.gz 1.8 GB
EGAF00002737523 fastq.gz 3.4 GB
EGAF00002737524 fastq.gz 3.5 GB
EGAF00002737525 fastq.gz 2.8 GB
EGAF00002737526 fastq.gz 2.9 GB
EGAF00002737527 fastq.gz 2.3 GB
EGAF00002737528 fastq.gz 2.4 GB
EGAF00002737529 fastq.gz 3.0 GB
EGAF00002737530 fastq.gz 3.1 GB
EGAF00002737531 fastq.gz 4.7 GB
EGAF00002737532 fastq.gz 4.9 GB
EGAF00002737533 fastq.gz 1.3 GB
EGAF00002737534 fastq.gz 1.3 GB
EGAF00002737535 fastq.gz 1.9 GB
EGAF00002737536 fastq.gz 2.0 GB
EGAF00002737537 fastq.gz 1.9 GB
EGAF00002737538 fastq.gz 2.0 GB
EGAF00002737539 fastq.gz 2.7 GB
EGAF00002737540 fastq.gz 2.8 GB
EGAF00002737541 fastq.gz 1.6 GB
EGAF00002737542 fastq.gz 1.6 GB
EGAF00002737543 fastq.gz 2.1 GB
EGAF00002737544 fastq.gz 2.1 GB
EGAF00002737545 fastq.gz 2.0 GB
EGAF00002737546 fastq.gz 2.1 GB
EGAF00002737547 fastq.gz 1.0 GB
EGAF00002737548 fastq.gz 1.1 GB
EGAF00002737549 fastq.gz 3.6 GB
EGAF00002737550 fastq.gz 3.7 GB
EGAF00002737551 fastq.gz 1.2 GB
EGAF00002737552 fastq.gz 1.2 GB
EGAF00002737553 fastq.gz 6.1 GB
EGAF00002737554 fastq.gz 6.2 GB
EGAF00002737559 fastq.gz 2.2 GB
EGAF00002737560 fastq.gz 2.2 GB
EGAF00002737563 fastq.gz 1.6 GB
EGAF00002737564 fastq.gz 1.7 GB
EGAF00002737565 fastq.gz 2.2 GB
EGAF00002737566 fastq.gz 2.2 GB
EGAF00002737567 fastq.gz 2.6 GB
EGAF00002737568 fastq.gz 2.7 GB
EGAF00002737569 fastq.gz 2.2 GB
EGAF00002737570 fastq.gz 2.2 GB
EGAF00002737571 fastq.gz 5.6 GB
EGAF00002737572 fastq.gz 5.7 GB
EGAF00002737577 fastq.gz 2.0 GB
EGAF00002737578 fastq.gz 2.1 GB
EGAF00002737579 fastq.gz 1.8 GB
EGAF00002737580 fastq.gz 1.8 GB
EGAF00002737581 fastq.gz 3.0 GB
EGAF00002737582 fastq.gz 3.1 GB
EGAF00002737583 fastq.gz 1.3 GB
EGAF00002737584 fastq.gz 1.3 GB
EGAF00002737585 fastq.gz 1.2 GB
EGAF00002737586 fastq.gz 1.3 GB
EGAF00002737587 fastq.gz 1.7 GB
EGAF00002737588 fastq.gz 1.8 GB
EGAF00002737589 fastq.gz 1.8 GB
EGAF00002737590 fastq.gz 1.8 GB
EGAF00002737591 fastq.gz 1.8 GB
EGAF00002737592 fastq.gz 1.9 GB
EGAF00002737593 fastq.gz 4.1 GB
EGAF00002737594 fastq.gz 4.2 GB
EGAF00002737595 fastq.gz 3.4 GB
EGAF00002737596 fastq.gz 3.5 GB
EGAF00002737597 fastq.gz 1.9 GB
EGAF00002737598 fastq.gz 2.0 GB
EGAF00002737599 fastq.gz 3.0 GB
EGAF00002737600 fastq.gz 3.2 GB
EGAF00002737601 fastq.gz 1.4 GB
EGAF00002737602 fastq.gz 1.4 GB
EGAF00002737603 fastq.gz 2.7 GB
EGAF00002737604 fastq.gz 2.7 GB
EGAF00002737607 fastq.gz 1.2 GB
EGAF00002737608 fastq.gz 1.3 GB
EGAF00002737609 fastq.gz 1.8 GB
EGAF00002737610 fastq.gz 1.8 GB
EGAF00002737611 fastq.gz 1.9 GB
EGAF00002737612 fastq.gz 1.9 GB
EGAF00002737615 fastq.gz 1.5 GB
EGAF00002737616 fastq.gz 1.6 GB
EGAF00002737617 fastq.gz 2.2 GB
EGAF00002737618 fastq.gz 2.3 GB
EGAF00002737623 fastq.gz 2.1 GB
EGAF00002737624 fastq.gz 2.1 GB
EGAF00002737625 fastq.gz 1.7 GB
EGAF00002737626 fastq.gz 1.8 GB
EGAF00002737627 fastq.gz 1.9 GB
EGAF00002737628 fastq.gz 1.9 GB
EGAF00002737629 fastq.gz 846.6 MB
EGAF00002737630 fastq.gz 858.9 MB
EGAF00002737631 fastq.gz 1.3 GB
EGAF00002737632 fastq.gz 1.3 GB
EGAF00002737633 fastq.gz 1.8 GB
EGAF00002737634 fastq.gz 1.8 GB
EGAF00002737635 fastq.gz 1.6 GB
EGAF00002737636 fastq.gz 1.6 GB
EGAF00002737637 fastq.gz 1.1 GB
EGAF00002737638 fastq.gz 1.1 GB
EGAF00002737639 fastq.gz 1.8 GB
EGAF00002737640 fastq.gz 1.8 GB
EGAF00002737641 fastq.gz 2.1 GB
EGAF00002737642 fastq.gz 2.1 GB
EGAF00002737643 fastq.gz 1.6 GB
EGAF00002737644 fastq.gz 1.6 GB
EGAF00002737645 fastq.gz 1.6 GB
EGAF00002737646 fastq.gz 1.6 GB
EGAF00002737647 fastq.gz 1.9 GB
EGAF00002737648 fastq.gz 2.0 GB
EGAF00002737649 fastq.gz 2.5 GB
EGAF00002737650 fastq.gz 2.6 GB
EGAF00002737655 fastq.gz 2.8 GB
EGAF00002737656 fastq.gz 2.9 GB
EGAF00002737663 fastq.gz 1.9 GB
EGAF00002737664 fastq.gz 1.9 GB
EGAF00002737665 fastq.gz 3.6 GB
EGAF00002737666 fastq.gz 3.7 GB
EGAF00002737669 fastq.gz 2.9 GB
EGAF00002737670 fastq.gz 3.0 GB
EGAF00002737671 fastq.gz 2.7 GB
EGAF00002737672 fastq.gz 2.8 GB
EGAF00002737673 fastq.gz 2.1 GB
EGAF00002737674 fastq.gz 2.1 GB
EGAF00002737675 fastq.gz 2.8 GB
EGAF00002737676 fastq.gz 3.0 GB
EGAF00002737679 fastq.gz 2.0 GB
EGAF00002737680 fastq.gz 2.0 GB
EGAF00002737681 fastq.gz 1.5 GB
EGAF00002737682 fastq.gz 1.5 GB
EGAF00002737685 fastq.gz 6.0 GB
EGAF00002737686 fastq.gz 6.3 GB
EGAF00002737687 fastq.gz 4.4 GB
EGAF00002737688 fastq.gz 4.6 GB
EGAF00002737691 fastq.gz 3.4 GB
EGAF00002737692 fastq.gz 3.5 GB
EGAF00002737693 fastq.gz 3.9 GB
EGAF00002737694 fastq.gz 4.0 GB
EGAF00002737697 fastq.gz 1.6 GB
EGAF00002737698 fastq.gz 1.7 GB
EGAF00002737699 fastq.gz 3.8 GB
EGAF00002737700 fastq.gz 4.0 GB
EGAF00002737701 fastq.gz 1.1 GB
EGAF00002737702 fastq.gz 1.1 GB
EGAF00002737703 fastq.gz 4.9 GB
EGAF00002737704 fastq.gz 5.1 GB
EGAF00002737705 fastq.gz 1.4 GB
EGAF00002737706 fastq.gz 1.5 GB
EGAF00002737711 fastq.gz 2.4 GB
EGAF00002737712 fastq.gz 2.5 GB
EGAF00002737713 fastq.gz 1.2 GB
EGAF00002737714 fastq.gz 1.2 GB
EGAF00002737715 fastq.gz 935.6 MB
EGAF00002737716 fastq.gz 969.6 MB
EGAF00002737717 fastq.gz 1.5 GB
EGAF00002737718 fastq.gz 1.6 GB
EGAF00002737719 fastq.gz 1.8 GB
EGAF00002737720 fastq.gz 1.8 GB
EGAF00002737721 fastq.gz 2.0 GB
EGAF00002737722 fastq.gz 2.1 GB
EGAF00002737723 fastq.gz 3.2 GB
EGAF00002737724 fastq.gz 3.3 GB
EGAF00002737727 fastq.gz 2.1 GB
EGAF00002737728 fastq.gz 2.2 GB
EGAF00002737729 fastq.gz 1.9 GB
EGAF00002737730 fastq.gz 1.9 GB
EGAF00002737731 fastq.gz 1.4 GB
EGAF00002737732 fastq.gz 1.5 GB
EGAF00002737733 fastq.gz 1.4 GB
EGAF00002737734 fastq.gz 1.4 GB
234 Files (534.2 GB)