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59 CLPD-NK cases WGS & WTS data

For the cohort of 59 samples, we performed TruSeq DNA PCR-Free whole-genome sequencing library preparation according to manufacturer’s instructions (llumina, ILMN, San Diego, CA) on the automated NGS Star liquid handling platform (Hamilton, Bonaduz, Switzerland) followed by 2x150 bp paired-end sequencing on the HiSeqX or NovaSeq6000 (ILMN). An average coverage of >100x was achieved. For whole transcriptome analysis, the TruSeq Total Stranded RNA kit was used, starting with 250 ng of total RNA, to generate RNA libraries following the manufacturer’s recommendations (ILMN). 2x100bp paired-end reads were sequenced on the NovaSeq 6000 with a median of 50 mio. reads per sample (ILMN).

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MLL Munich Leukemia Laboratory Data Access Policy

MLL Munich Leukemia Laboratory Data Access Policy This policy describes how the Munich Leukemia Laboratory’s (MLL) Data Access Committee (DAC) will process requests for datasets stored in the European Genome-phenome Archive (EGA), when those datasets are made available by manuscripts that specifically reference this policy. Purpose 1. To ensure that applicants are qualified investigators, affiliated with an academic, non- profit, or government research organization. 2. To ensure that users of the data agree to comply with applicable laws, including requirements as outlined in any governing consent and appropriate ethical approvals, along with any restrictions for the data in question. General principles The DAC will consider applications for access to datasets stored in the EGA when authorized to do so in accordance with this policy. Access to de-identified and anonymized genomic sequence data will be granted to qualified researchers for appropriate use. A qualified researcher refers to a scientist who is employed, or legitimately affiliated with an academic, non-profit, or government research organization. The data will be deposited in the European Genome-Phenome Archive (EGA) and access will be by application to the MLL Data Access Committee (MLL DAC). Access to data will be granted to researchers for appropriate use and will be governed by the provisions in the associated informed consent for each cohort or collection, and the terms contained in the Data Access Agreement. The MLL DAC is concerned with access to de-identified anonymized genomic data generated by MLL, and associated phenotypic information published by MLL in reports of the analyses of each tumor subtype. The Committee will not consider requests for more detailed phenotypic information which is held by the principal investigators for the individual case collections. Access to this data should be by arrangement with the relevant principal investigator. Access is conditional upon availability of data and signed agreement by the researcher(s) and the responsible employing Institution to abide by policies related to publication, data disposal, ethical approval, confidentiality, and security. Application procedure Applicants requesting access to data from MLL will be asked to complete a basic application form and to agree to the terms and conditions laid out in the Data Access Agreement (DAA). Applications must be made by a Laboratory Head, Principal Investigator, or Departmental Chair. Both the applicant and an authorized representative of the applicant’s institution, e.g., the relevant Head of Department, Head of Institute, or equivalent, must sign the DAA. Successful applicants who have access to data will be designated "Registered Users" and will be issued a username and password by the EGA to enable access to the database. The MLL DAC will consider applications that include named collaborators, but each Institution must sign a separate Data Access Agreement. Should you wish to share the data with additional collaborators not previously approved, they must make a separate application for access to the Data. Applicants agree to use the data for the approved purpose and project described in the application; use of the data for a new purpose or project will require a new application and approval. Membership of Consortium Data Access Committee Prof. Dr. med. Dr. phil. Torsten Haferlach CEO MLL Munich Leukemia Laboratory and MHP Munich Hematology Practice; Head of the Cytomorphology Department, Munich Germany Prof. Dr. med. Claudia Haferlach Head of the Cytogenetics and Fluorescence In-situ Hybridization Department, MLL Munich Leukemia Laboratory, Munich, Germany Prof. Dr. med. Wolfgang Kern Head of the Immunophenotyping Department, MLL Munich Leukemia Laboratory, Munich Germany Dr. rer. nat. Manja Meggendorfer, MBA Head of Molecular genetics & Head of Research and development, MLL Munich Leukemia Laboratory, Munich Germany Assessment Criteria Each application will be assessed to determine if: • it has been submitted by a qualified researcher or researchers, embedded in a recognized research institution that can provide institutional responsibility for appropriate research governance • the project described constitutes “biomedical research” in the context of the consent process, and is likely to be understood as such by the sample donors • it does not breach any of the ethical permissions or restrictions in the consent forms for any component cohort or collection; • it does not have the potential to produce information that will enable identification of individual participants or other individually identifiable information The DAC will use these practices in its assessment: • The MLL DAC does NOT attempt to peer review the scientific quality of proposals. However, it does ask for a brief summary of the research to be undertaken, to judge whether it falls within the scope of the consents. It also considers whether the research is grossly inadequate or ethically questionable, and reserves the right to require clarification for those requests that do not appear to attain even a minimal standard of competence; • the use of data by commercial companies for commercial purposes is prohibited; and use of de-identified and anonymized data is permissible

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006009 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00005797623 bam 5.3 GB
EGAF00005797624 bam 167.7 GB
EGAF00005797625 bam 133.6 GB
EGAF00005797626 bam 6.6 GB
EGAF00005797627 bam 4.3 GB
EGAF00005797628 bam 4.1 GB
EGAF00005797629 bam 147.6 GB
EGAF00005797630 bam 180.2 GB
EGAF00005797631 bam 142.4 GB
EGAF00005797632 bam 5.6 GB
EGAF00005797633 bam 144.0 GB
EGAF00005797634 bam 143.3 GB
EGAF00005797635 bam 149.8 GB
EGAF00005797636 bam 138.4 GB
EGAF00005797637 bam 6.4 GB
EGAF00005797638 bam 140.0 GB
EGAF00005797639 bam 124.3 GB
EGAF00005797640 bam 134.7 GB
EGAF00005797641 bam 7.4 GB
EGAF00005797642 bam 6.4 GB
EGAF00005797643 bam 5.5 GB
EGAF00005797644 bam 9.2 GB
EGAF00005797645 bam 5.5 GB
EGAF00005797646 bam 6.0 GB
EGAF00005797647 bam 6.9 GB
EGAF00005797648 bam 5.9 GB
EGAF00005797649 bam 122.9 GB
EGAF00005797650 bam 139.4 GB
EGAF00005797651 bam 5.4 GB
EGAF00005797652 bam 129.0 GB
EGAF00005797653 bai 8.0 MB
EGAF00005797654 bai 8.7 MB
EGAF00005797655 bai 8.7 MB
EGAF00005797656 bai 8.7 MB
EGAF00005797657 bai 6.2 MB
EGAF00005797658 bai 7.2 MB
EGAF00005797659 bai 6.8 MB
EGAF00005797660 bai 8.0 MB
EGAF00005797661 bai 8.7 MB
EGAF00005797662 bai 8.7 MB
EGAF00005797663 bai 8.7 MB
EGAF00005797664 bai 8.7 MB
EGAF00005797665 bai 8.2 MB
EGAF00005797666 bai 8.7 MB
EGAF00005797667 bai 8.7 MB
EGAF00005797668 bai 8.7 MB
EGAF00005797669 bai 8.7 MB
EGAF00005797670 bai 8.7 MB
EGAF00005797671 bai 6.9 MB
EGAF00005797672 bai 5.8 MB
EGAF00005797673 bai 7.0 MB
EGAF00005797674 bai 7.2 MB
EGAF00005797675 bai 8.7 MB
EGAF00005797676 bai 8.7 MB
EGAF00005797677 bai 7.3 MB
EGAF00005797678 bai 7.6 MB
EGAF00005797679 bai 8.7 MB
EGAF00005797680 bai 7.6 MB
EGAF00005797681 bai 6.8 MB
EGAF00005800316 bam 5.5 GB
EGAF00005800317 bam 150.7 GB
EGAF00005800318 bam 6.5 GB
EGAF00005800319 bam 133.5 GB
EGAF00005800320 bam 1.7 GB
EGAF00005800321 bam 5.2 GB
EGAF00005800322 bam 117.3 GB
EGAF00005800323 bam 6.5 GB
EGAF00005800324 bam 4.0 GB
EGAF00005800325 bam 4.3 GB
EGAF00005800326 bam 5.9 GB
EGAF00005800327 bam 4.7 GB
EGAF00005800328 bam 139.8 GB
EGAF00005800329 bam 122.1 GB
EGAF00005800330 bam 145.9 GB
EGAF00005800331 bam 5.1 GB
EGAF00005800332 bam 146.3 GB
EGAF00005800333 bam 6.4 GB
EGAF00005800334 bam 164.3 GB
EGAF00005800335 bam 6.5 GB
EGAF00005800336 bam 6.9 GB
EGAF00005800337 bam 6.6 GB
EGAF00005800338 bam 143.5 GB
EGAF00005800339 bam 134.5 GB
EGAF00005800340 bam 139.0 GB
EGAF00005800341 bam 4.3 GB
EGAF00005800342 bam 131.1 GB
EGAF00005800343 bam 164.3 GB
EGAF00005800344 bam 141.9 GB
EGAF00005800345 bam 161.6 GB
EGAF00005800346 bam 5.7 GB
EGAF00005800347 bam 5.2 GB
EGAF00005800348 bam 5.9 GB
EGAF00005800349 bam 5.8 GB
EGAF00005800350 bam 5.5 GB
EGAF00005800351 bam 4.3 GB
EGAF00005800352 bam 123.4 GB
EGAF00005800353 bam 126.7 GB
EGAF00005800354 bam 126.0 GB
EGAF00005800355 bam 5.1 GB
EGAF00005800356 bam 97.5 GB
EGAF00005800357 bam 4.6 GB
EGAF00005800358 bam 3.5 GB
EGAF00005800359 bam 5.6 GB
EGAF00005800360 bam 6.3 GB
EGAF00005800361 bam 147.3 GB
EGAF00005800362 bam 141.8 GB
EGAF00005800363 bam 126.5 GB
EGAF00005800364 bam 152.8 GB
EGAF00005800365 bam 6.5 GB
EGAF00005800366 bam 6.1 GB
EGAF00005800367 bam 133.2 GB
EGAF00005800368 bam 142.3 GB
EGAF00005800369 bam 120.1 GB
EGAF00005800370 bam 134.5 GB
EGAF00005800371 bam 4.7 GB
EGAF00005800372 bam 139.2 GB
EGAF00005800373 bam 122.9 GB
EGAF00005800374 bam 139.0 GB
EGAF00005800375 bam 9.5 GB
EGAF00005800376 bam 161.1 GB
EGAF00005800377 bam 165.5 GB
EGAF00005800378 bam 123.6 GB
EGAF00005800379 bam 147.7 GB
EGAF00005800380 bam 139.5 GB
EGAF00005800381 bam 113.3 GB
EGAF00005800382 bam 6.1 GB
EGAF00005800383 bam 5.2 GB
EGAF00005800384 bam 153.6 GB
EGAF00005800385 bam 150.5 GB
EGAF00005800386 bam 4.4 GB
EGAF00005800387 bam 116.0 GB
EGAF00005800388 bam 132.1 GB
EGAF00005800389 bam 143.3 GB
EGAF00005800390 bam 4.5 GB
EGAF00005800391 bam 4.8 GB
EGAF00005800392 bam 6.8 GB
EGAF00005800393 bam 6.2 GB
EGAF00005800394 bam 6.8 GB
EGAF00005800395 bam 191.1 GB
EGAF00005800396 bam 120.5 GB
EGAF00005800397 bam 7.2 GB
EGAF00005800398 bam 6.1 GB
EGAF00005800399 bam 154.2 GB
EGAF00005800400 bam 147.8 GB
EGAF00005800401 bam 6.8 GB
EGAF00005800402 bam 5.7 GB
EGAF00005800403 bam 7.3 GB
EGAF00005800404 bam 7.0 GB
EGAF00005800405 bai 5.7 MB
EGAF00005800406 bai 8.7 MB
EGAF00005800407 bai 6.4 MB
EGAF00005800408 bai 8.7 MB
EGAF00005800409 bai 6.4 MB
EGAF00005800410 bai 8.7 MB
EGAF00005800411 bai 8.7 MB
EGAF00005800412 bai 8.7 MB
EGAF00005800413 bai 6.3 MB
EGAF00005800414 bai 7.9 MB
EGAF00005800415 bai 6.2 MB
EGAF00005800416 bai 8.0 MB
EGAF00005800417 bai 7.2 MB
EGAF00005800418 bai 6.3 MB
EGAF00005800419 bai 8.7 MB
EGAF00005800420 bai 6.5 MB
EGAF00005800421 bai 8.7 MB
EGAF00005800422 bai 5.8 MB
EGAF00005800423 bai 4.9 MB
EGAF00005800424 bai 7.1 MB
EGAF00005800425 bai 7.1 MB
EGAF00005800426 bai 7.1 MB
EGAF00005800427 bai 8.7 MB
EGAF00005800428 bai 8.7 MB
EGAF00005800429 bai 8.7 MB
EGAF00005800430 bai 7.3 MB
EGAF00005800431 bai 8.7 MB
EGAF00005800432 bai 8.7 MB
EGAF00005800433 bai 8.7 MB
EGAF00005800434 bai 8.7 MB
EGAF00005800435 bai 8.7 MB
EGAF00005800436 bai 6.1 MB
EGAF00005800437 bai 7.5 MB
EGAF00005800438 bai 6.3 MB
EGAF00005800439 bai 8.7 MB
EGAF00005800440 bai 7.5 MB
EGAF00005800441 bai 8.7 MB
EGAF00005800442 bai 7.4 MB
EGAF00005800443 bai 7.5 MB
EGAF00005800444 bai 7.1 MB
EGAF00005800445 bai 6.0 MB
EGAF00005800446 bai 8.7 MB
EGAF00005800447 bai 7.7 MB
EGAF00005800448 bai 8.7 MB
EGAF00005800449 bai 6.0 MB
EGAF00005800450 bai 8.7 MB
EGAF00005800451 bai 6.7 MB
EGAF00005800452 bai 7.2 MB
EGAF00005800453 bai 7.2 MB
EGAF00005800454 bai 8.7 MB
EGAF00005800455 bai 8.7 MB
EGAF00005800456 bai 6.5 MB
EGAF00005800457 bai 6.5 MB
EGAF00005800458 bai 8.7 MB
EGAF00005800459 bai 8.7 MB
EGAF00005800460 bai 8.7 MB
EGAF00005800461 bai 8.7 MB
EGAF00005800462 bai 8.7 MB
EGAF00005800463 bai 8.7 MB
EGAF00005800464 bai 6.6 MB
EGAF00005800465 bai 8.7 MB
EGAF00005800466 bai 8.7 MB
EGAF00005800467 bai 8.7 MB
EGAF00005800468 bai 8.7 MB
EGAF00005800469 bai 7.4 MB
EGAF00005800470 bai 8.7 MB
EGAF00005800471 bai 8.7 MB
EGAF00005800472 bai 6.8 MB
EGAF00005800473 bai 8.7 MB
EGAF00005800474 bai 7.4 MB
EGAF00005800475 bai 8.7 MB
EGAF00005800476 bai 5.4 MB
EGAF00005800477 bai 8.7 MB
EGAF00005800478 bai 6.3 MB
EGAF00005800479 bai 7.0 MB
EGAF00005800480 bai 8.7 MB
EGAF00005800481 bai 7.0 MB
EGAF00005800482 bai 8.7 MB
EGAF00005800483 bai 8.7 MB
EGAF00005800484 bai 8.7 MB
EGAF00005800485 bai 8.7 MB
EGAF00005800486 bai 7.1 MB
EGAF00005800487 bai 8.7 MB
EGAF00005800488 bai 6.1 MB
EGAF00005800489 bai 8.7 MB
EGAF00005800490 bai 6.8 MB
EGAF00005800491 bai 7.3 MB
235 Files (8.7 TB)