About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Single-cell RNA and TCR sequencing of BALF from 11 ICI-pneumonitis patients and 6 controls

Dataset containing the FASTQ files of RNA (scr*) and TCR (vdj*) sequencing of 17 bronchoalveolar lavage fluid samples collected from ICI pneumonitis (n=11) and control (n=6) patients. To comply with GDPR regulations, please note that individual sample identifiers used for this data deposit (alphabetical ID) are different from and cannot be traced back to the patient identifiers used throughout the manuscript (numerical ID).

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VIB Policy for Data Access and Data Transfer

VIB Policy for Data Access and Data Transfer Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - The request should contain the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the request. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006762 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00007698522 fastq.gz 3.4 GB Report
EGAF00007698523 fastq.gz 9.6 GB Report
EGAF00007698524 fastq.gz 23.5 GB Report
EGAF00007698525 fastq.gz 2.2 GB Report
EGAF00007698526 fastq.gz 6.5 GB Report
EGAF00007698527 fastq.gz 15.3 GB Report
EGAF00007698528 fastq.gz 3.0 GB Report
EGAF00007698529 fastq.gz 9.0 GB Report
EGAF00007698530 fastq.gz 21.5 GB Report
EGAF00007698531 fastq.gz 1.1 GB Report
EGAF00007698532 fastq.gz 3.5 GB Report
EGAF00007698533 fastq.gz 8.4 GB Report
EGAF00007698534 fastq.gz 2.8 GB Report
EGAF00007698535 fastq.gz 7.7 GB Report
EGAF00007698536 fastq.gz 18.5 GB Report
EGAF00007698537 fastq.gz 3.6 GB Report
EGAF00007698538 fastq.gz 11.0 GB Report
EGAF00007698539 fastq.gz 26.9 GB Report
EGAF00007698540 fastq.gz 3.1 GB Report
EGAF00007698541 fastq.gz 9.0 GB Report
EGAF00007698542 fastq.gz 21.8 GB Report
EGAF00007698543 fastq.gz 1.5 GB Report
EGAF00007698544 fastq.gz 4.3 GB Report
EGAF00007698545 fastq.gz 10.5 GB Report
EGAF00007698546 fastq.gz 3.0 GB Report
EGAF00007698547 fastq.gz 9.5 GB Report
EGAF00007698548 fastq.gz 23.1 GB Report
EGAF00007698549 fastq.gz 15.7 GB Report
EGAF00007698550 fastq.gz 46.7 GB Report
EGAF00007698551 fastq.gz 113.4 GB Report
EGAF00007698552 fastq.gz 1.5 GB Report
EGAF00007698553 fastq.gz 4.7 GB Report
EGAF00007698554 fastq.gz 11.1 GB Report
EGAF00007698555 fastq.gz 3.6 GB Report
EGAF00007698556 fastq.gz 10.2 GB Report
EGAF00007698557 fastq.gz 25.0 GB Report
EGAF00007698558 fastq.gz 2.2 GB Report
EGAF00007698559 fastq.gz 6.2 GB Report
EGAF00007698560 fastq.gz 15.1 GB Report
EGAF00007698561 fastq.gz 376.9 MB Report
EGAF00007698562 fastq.gz 1.1 GB Report
EGAF00007698563 fastq.gz 2.4 GB Report
EGAF00007698564 fastq.gz 3.0 GB Report
EGAF00007698565 fastq.gz 9.4 GB Report
EGAF00007698566 fastq.gz 23.1 GB Report
EGAF00007698567 fastq.gz 2.7 GB Report
EGAF00007698568 fastq.gz 7.3 GB Report
EGAF00007698569 fastq.gz 17.4 GB Report
EGAF00007698570 fastq.gz 647.4 MB Report
EGAF00007698571 fastq.gz 1.9 GB Report
EGAF00007698572 fastq.gz 4.4 GB Report
EGAF00007698573 fastq.gz 56.7 MB Report
EGAF00007698574 fastq.gz 147.5 MB Report
EGAF00007698575 fastq.gz 346.8 MB Report
EGAF00007698576 fastq.gz 38.6 MB Report
EGAF00007698577 fastq.gz 99.5 MB Report
EGAF00007698578 fastq.gz 234.3 MB Report
EGAF00007698579 fastq.gz 179.5 MB Report
EGAF00007698580 fastq.gz 496.6 MB Report
EGAF00007698581 fastq.gz 1.2 GB Report
EGAF00007698582 fastq.gz 206.4 MB Report
EGAF00007698583 fastq.gz 603.2 MB Report
EGAF00007698584 fastq.gz 1.5 GB Report
EGAF00007698585 fastq.gz 134.5 MB Report
EGAF00007698586 fastq.gz 385.5 MB Report
EGAF00007698587 fastq.gz 918.4 MB Report
EGAF00007698588 fastq.gz 26.5 MB Report
EGAF00007698589 fastq.gz 70.2 MB Report
EGAF00007698590 fastq.gz 160.9 MB Report
EGAF00007698591 fastq.gz 130.3 MB Report
EGAF00007698592 fastq.gz 1.8 GB Report
EGAF00007698593 fastq.gz 2.0 GB Report
EGAF00007698594 fastq.gz 179.6 MB Report
EGAF00007698595 fastq.gz 500.9 MB Report
EGAF00007698596 fastq.gz 1.2 GB Report
EGAF00007698597 fastq.gz 245.7 MB Report
EGAF00007698598 fastq.gz 674.6 MB Report
EGAF00007698599 fastq.gz 1.6 GB Report
EGAF00007698600 fastq.gz 375.1 MB Report
EGAF00007698601 fastq.gz 2.5 GB Report
EGAF00007698602 fastq.gz 3.4 GB Report
EGAF00007698603 fastq.gz 255.8 MB Report
EGAF00007698604 fastq.gz 734.2 MB Report
EGAF00007698605 fastq.gz 1.7 GB Report
EGAF00007698606 fastq.gz 792.6 MB Report
EGAF00007698607 fastq.gz 3.0 GB Report
EGAF00007698608 fastq.gz 5.8 GB Report
EGAF00007698609 fastq.gz 223.0 MB Report
EGAF00007698610 fastq.gz 625.7 MB Report
EGAF00007698611 fastq.gz 1.5 GB Report
EGAF00007698612 fastq.gz 221.3 MB Report
EGAF00007698613 fastq.gz 3.0 GB Report
EGAF00007698614 fastq.gz 3.4 GB Report
EGAF00007698615 fastq.gz 265.2 MB Report
EGAF00007698616 fastq.gz 777.2 MB Report
EGAF00007698617 fastq.gz 1.8 GB Report
EGAF00007698618 fastq.gz 258.6 MB Report
EGAF00007698619 fastq.gz 702.7 MB Report
EGAF00007698620 fastq.gz 1.5 GB Report
EGAF00007698621 fastq.gz 178.0 MB Report
EGAF00007698622 fastq.gz 2.5 GB Report
EGAF00007698623 fastq.gz 2.8 GB Report
102 Files (645.5 GB)