About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WGS data of paediatric ETV6::RUNX1 B cell acute lymphoblastic leukemia (set2)

The dataset includes FASTQ and CRAM files from second relapse and matched remission (control) samples of one ETV6::RUNX1 ALL patient (ALLK-104). Sequencing libraries were made using using NEBNext® Ultra™ II DNA Library Prep Kit (Cat No. E7645). Both second relapse (90x) and remission (30x) samples were sequenced using Illumina NovaSeq 6000.

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Two PIs (Tampere/Kuopio) and a legal representative of the Tampere University Hospital

Data will be shared if the proposed project falls within the patient/caretaker consent

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000001599 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000581622 crai 861.4 kB
EGAF50000581623 crai 2.4 MB
EGAF50000581624 cram 8.9 GB
EGAF50000581625 cram 33.0 GB
EGAF50000581642 fq.gz 24.5 GB
EGAF50000581643 fq.gz 26.0 GB
EGAF50000581644 fq.gz 20.6 GB
EGAF50000581645 fq.gz 22.1 GB
EGAF50000581646 fq.gz 19.4 GB
EGAF50000581647 fq.gz 20.7 GB
10 Files (175.3 GB)