4759 results for "*oma"

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• Whole-exome sequencing laser capture micro-dissected biopsies of human renal cell carcinoma

  The dataset comprises whole exome sequences from laser capture micro-dissected biopsies of 10 patients diagnosed with clear cell renal cell carcinoma. In total over 100 regions are sampled to allow 'focally exhaustive' sequencing and explore the limits of intra-tumoural heterogeneity.

  Dataset EGAD00001008029

• RNA-seq on neuroblastoma PDX model COG-N-519 treated with control miR-1283 and test miR-99b-5p mimics

  RNA-sequencing on neuroblastoma PDX model COG-N-519 treated with control miR-1283 and test miR-99b-5p mimics. Three samples from each of the treatment condition were analysed. Next-Seq platform was used for sequencing.

  Dataset EGAD00001008035

• Long-read sequencing for cell-free DNA analysis (human)

  31 pregnant women at different trimesters, 6 hepatitis B carriers, and 8 patients with hepatocellular carcinoma

  Dataset EGAD00001008980

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0183_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0183_003A for Follicular lymphoma patient sample TFRI_Cont_9

  Dataset EGAD00001010210

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0187_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0187_003A for Follicular lymphoma patient sample TFRI_Cont_10

  Dataset EGAD00001010211

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0188_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0188_003A for Follicular lymphoma patient sample TFRI_Cont_11

  Dataset EGAD00001010212

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0197_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0197_003A for Follicular lymphoma patient sample TFRI_Cont_12

  Dataset EGAD00001010213

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0167_001

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0167_001 for Follicular lymphoma patient sample TFRIPAIR2_FL

  Dataset EGAD00001010215

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0168_001

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0168_001 for Follicular lymphoma patient sample TFRIPAIR3_FL

  Dataset EGAD00001010216

• Myeloid cell programming in patients with non-medullary thyroid carcinoma

  This dataset contains single-cell RNA sequencing data from patients with thyroid cancer (n=7), multinodal Goiter (n=3) and healthy individuals (n=5). Mononuclear cells were taken from both the peripheral blood and the bone marrow compartments. We used a pooled single-cell design where multiple individuals were pooled in a single sample for sequencing (NextSeq 500-V2) and later demultiplexed using their genotype data. Associated metadata contains information on the phenotypes per individual, the pooling design and the linkage between the supplied files and sequenced pools. Due to limitations from EGA in uploading single-cell data, the raw fastq files were processed as follows: (i) I1/I2/R1/R2 fast files were concatenated over the different lanes. (ii) Concatenated I1 and I2 files were interleaved, as were the concatenated R1 and R2 files to generate two fastq files per pool containing all the information. To interleave the fastq files, the BBmap tool bbmap/reformat.sh was used, which can also be used to de-interleave the files.

  Dataset EGAD00001008108

• IMCISION DNAseq

  Whole-exome sequencing of 32 primary head and neck squamous cell carcinoma samples prior to treatment with neoadjuvant anti-PD-1 (n=6) or anti-PD-1 + anti-CTLA-4 (n=26) immunotherapy. DNA quantity used: 50ng. Library Preparation Kit: Twist Human Core Exome Plus (Twist Bioscience). Sequencing parameters: NovaSeq 6000, 2x 100 bp. File type: fastQ.

  Dataset EGAD00001008139

• EPICC: Evolutionary Predictions in Colorectal Cancer

  ATAC-seq profiling bam files from colorectal carcinoma and adenoma.

  Dataset EGAD00001008140

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0171_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0171_001A for Follicular lymphoma patient sample TFRI_Pair_6_FL

  Dataset EGAD00001010219

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0178_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0178_001A for Follicular lymphoma patient sample TFRIPAIR8_FL

  Dataset EGAD00001010220

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0183_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0183_001A for Follicular lymphoma patient sample TFRIPAIR9_FL

  Dataset EGAD00001010221

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0187_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0187_001A for Follicular lymphoma patient sample TFRIPAIR10_FL

  Dataset EGAD00001010222

• WGS samples for multiple myeloma (hipo-067 and hipo-K08K)

  Four PAIRED WGS samples, tumor and control, were sequenced on a HiSeq X Ten and the library preparation kit used was Illumina TruSeq Nano DNA. The tumor was multiple myeloma from bone marrow.

  Dataset EGAD00001008150

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0188_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0188_001A for Follicular lymphoma patient sample TFRIPAIR11_FL

  Dataset EGAD00001010223

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0197_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0197_001A for Follicular lymphoma patient sample TFRIPAIR12_FL

  Dataset EGAD00001010224

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0198_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0198_001A for Follicular lymphoma patient sample TFRI_Pair_13_FL

  Dataset EGAD00001010225

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0167_002

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0167_002 for Diffuse large B-cell lymphoma patient sample TFRIPAIR2_DLBCL

  Dataset EGAD00001010226

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0168_002

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0168_002 for Diffuse large B-cell lymphoma patient sample TFRIPAIR3_DLBCL

  Dataset EGAD00001010227

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0169_002

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0169_002 for Diffuse large B-cell lymphoma patient sample TFRIPAIR4_DLBCL

  Dataset EGAD00001010228

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0170_002A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0170_002A for Diffuse large B-cell lymphoma patient sample TFRIPAIR5_DLBCL

  Dataset EGAD00001010229

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0171_002A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0171_002A for Diffuse large B-cell lymphoma patient sample TFRI_Pair_6_DLBCL

  Dataset EGAD00001010230