9985 results for "cancer rna-seq"

in 37.44 milliseconds.

• Reference epigenome Fat-adipocyte05 input ChIP-Seq data generated from KEP study

  Fat-adipocyte05 input ChIP-Seq paired end data

  Dataset EGAD00001007491

• ATAC-Seq of human stimulated and cultured CD4+ Treg cells

  This dataset includes whole genome sequence data for ATAC-seq (42 samples) of human stimulated and cultured CD4+ Treg cells.

  Dataset EGAD00001004829

• Enhancer Mapping in Chronic Lymphocytic Leukemia

  In this study we profile the epigenomic enhancer landscapes of CLL B cells (CD19+/CD5+) harvested from peripheral blood of patients from our Center. Included are results of ChIPseq profiling using chromatin immunoprecipitation of the enhancer histone mark H3K27ac (acetylated lysine 27 on histone H3), and open chromatin profiles using ATAC-seq (assay for transposase accessible chromatin). These profiles are used to define the global enhancer and super enhancer landscape of CLL B cells, and to derive active transcription factor networks associated with this disease. Also included are H3K27ac ChIP-seq and ATAC-seq datasets for non-CLL B cells obtained from the peripheral blood of normal adult donors.

  Study phs001704

• scRNA-seq data of BALF and blood cells from COPD and control

  Chronic obstructive pulmonary disease (COPD) is ranked the third leading cause of death worldwide and hence constitutes a significant burden, both medically and financially. To date, the cellular mechanism underlying COPD is poorly understood and thus no effective therapy is currently available. To broaden the current knowledge of the immune landscape in the alveolar space, we performed scRNA-Seq of CD45-enriched bronchoalveolar lavage fluid (BALF) cells and isolated blood leukocytes obtained from COPD patients and healthy controls using both the Seq-Well and the Chromium (10x Genomics) technology.

  Study EGAS00001004369

• Sample Multiplexing Oligo Comparison

  In this study, we compared various multiplexing reagents, including MULTI-Seq, Hashtag antibody, and CellPlex, in patient-derived xenografts (PDXs). We found that all multiplexing reagents worked well in cell types robust to ex vivo manipulation but suffered from signal-to-noise issues in more delicate sample types. We also compared the performance of fixed scRNA-Seq kits and CRISPR-based destruction of non-informative genes.

  Study EGAS50000000153

• COVID-19 Postmortem Lung snRNA-seq

  A deeper understanding of the pathological mechanisms of SARS-CoV-2 infection is required to combat COVID-19. Through this dataset, we analyze postmortem lung cells from patients that are infected/uninfected with SARS-CoV-2 with snRNA-seq.

  Study EGAS00001004689

• H3K27ac ChIP-seq in primary prostate tumours

  H3K27ac ChIP-seq and input genome sequencing was performed in 19 primary prostate tumours classified as intermediate risk. Sequencing of ChIP DNA was performed on an Illumina HiSeq 2000 as either single end 50 bp reads (for 7 samples) or paired end 100 bp reads (for 12 samples). Input DNA from all samples was sequenced using single-end 50 bp reads. The files provided are in fastq format.

  Dataset EGAD00001003461

• Human Embryonic Multi-tissue ChIP-seq (Manchester)

  Histone ChIP-seq of 13 human embryonic tissues from weeks 6-8 of gestation. H3K4me3, H3K27me3 and H3K27ac. Biological replicates (n=2) for 11 tissues. Tissues (n): Brain (2); Retinal Pigmented Epithelium (eye)(2); Palate(2); Tongue (1); Left ventricle (heart)(2); Lung(2); Liver(2); Pancreas (2*); Stomach(1); Upper limb (2); Lower limb (2); Adrenal gland (2); Kidney (2)

  Dataset EGAD00001004335

• Single Cell ATAC-Seq of MELAS

  This dataset includes combined single Assay for Transposase-Accessible Chromatin, using sequencing (ATAC-seq), and mitochondrial DNA sequencing of peripheral blood mononuclear cells from three individuals with m.3243A>G associated MELAS (Mitochondrial Encephalopathy, Lactic Acidosis, and Stroke-like episodes).

  Study phs002217

• Patient data used in FLTseq paper

  Apply newly developed FLT-seq protocol and package FLAMES on a primary patient sample

  Study EGAS00001005597

• ICGC MMML-seq Data Freeze November 2012 whole genome sequencing

  ICGC MMML-seq Data Freeze November 2012 whole genome sequencing

  Dataset EGAD00001000278

• ICGC MMML-seq Data Freeze November 2012 whole exome sequencing

  ICGC MMML-seq Data Freeze November 2012 whole exome sequencing

  Dataset EGAD00001000279

• ICGC MMML-seq Data Freeze March 2013 whole genome sequencing

  ICGC MMML-seq Data Freeze March 2013 whole genome sequencing

  Dataset EGAD00001000355

• ICGC MMML-seq Data Freeze July 2013 whole genome sequencing

  ICGC MMML-seq Data Freeze July 2013 whole genome sequencing

  Dataset EGAD00001000645

• ICGC MMML-seq Data Freeze July 2013 transcriptome sequencing

  ICGC MMML-seq Data Freeze July 2013 transcriptome sequencing

  Dataset EGAD00001000648

• ICGC MMML-seq Data Freeze July 2013 miRNA sequencing

  ICGC MMML-seq Data Freeze July 2013 miRNA sequencing

  Dataset EGAD00001000650

• release_2: ICGC PedBrain: ChIP-Seq

  release_2: ICGC PedBrain: ChIP-Seq

  Dataset EGAD00001001621

• BLUEPRINT Bisulfite-seq and Whole Genome Sequencing of mantle cell lymphoma

  BLUEPRINT Bisulfite-seq and Whole Genome Sequencing of mantle cell lymphoma

  Dataset EGAD00001001892

• Reference epigenome Islet-derived-MSC01 h3k27ac ChIP-Seq data generated from KEP study

  Islet-derived-MSC01 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007402

• Reference epigenome Islet-derived-MSC01 h3k27me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC01 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007403

• Reference epigenome Islet-derived-MSC01 h3k36me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC01 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007404

• Reference epigenome Islet-derived-MSC01 h3k4me1 ChIP-Seq data generated from KEP study

  Islet-derived-MSC01 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007405

• Reference epigenome Islet-derived-MSC01 h3k4me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC01 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007406

• Reference epigenome Islet-derived-MSC01 h3k9me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC01 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007407

• Reference epigenome Islet-derived-MSC01 input ChIP-Seq data generated from KEP study

  Islet-derived-MSC01 input ChIP-Seq paired end data

  Dataset EGAD00001007408