Search Results - EGA European Genome-Phenome Archive

Methylation data

To ellucidate methylation activity in mRCC, methylation data was generated as part of the EuroTarget study

Dataset EGAD50000002295

CNS and systemic relapse in DLBCL

Microarray data for 230 DLBCL patients

Dataset EGAD00010001909

CNCD Recall by Genotypes

This is a DAC to handle recall by genotype studies by the conducted by the Center for Non-Communicable Disease Karachi, Pakistan.

Dac EGAC50000000937

BAP1_sequence_of_uveal_melanoma_cell_lines

Detection of BAP1 mutations in DNA from 3 uveal melanoma cell lines.

Study EGAS00001001520

Pulldown_DNA_methylation_study_v2

Pilot study to set up sequencing protocols for targeted pulldown methylation profiling

Study EGAS00001000979

NSCLC WGS

NSCLC WGS.

Dataset EGAD00001000888

Pseudogene_RNAseq

RNA sequencing to validate findings of somatic pseudogenes acquired during cancer development

Study EGAS00001000606

Low_input_LC__ISC_

R&D project to develop low input library construction methods.

Study EGAS00001001856

UK10K_NEURO_ASD_TAMPERE REL-2013-04-20

Dataset EGAD00001000437

Brain mets discovery cohort copy number calls

These are the Sequenza copy number calls for the 30 brain tumour samples within the discovery cohort.

Dataset EGAD00001005983

Chugai_colorectal_organoid_sequencing

Genomic and transcriptomic characterization of drug-resistant colon cancer stem cell lines.

Study EGAS00001000872

OT2_Illumina_WGS_CONT

Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort)

Dataset EGAD00001003371

MED12L Gene Alterations Define Aggressive BRCA2-Mutant Prostate Cancers

Aligned sequence data from 14 Prostate cancer samples with BRCA2 mutations

Dataset EGAD00001002739

Exome sequencing of isolate populations and Generation Scotland

Dataset EGAD00001002715

Reference epigenome IPS06_X_ENeuron_WGBS data generated from KEP study

A IPS06_X_ENeuron_WGBS paired end data for Early neuron cells(Tuj1)

Dataset EGAD00001003478

TRACERx RRBS

TRACERx 100: RRBS data from a subset of the first 100 TRACERx tumours

Dataset EGAD00001004798

UK10K_NEURO_FSZNK REL-2013-04-20

Dataset EGAD00001000439

Carcinoid study - WES dataset

Fernandez-Cuesta et al, 2014, Nature Communication, Whole exome sequencing data set

Dataset EGAD00001000820

McGill EMC Release 4 for assay "H3K27ac"

Dataset EGAD00001001298

RNAseq of U251 and two ID1 gene knockouts

Dataset EGAD00001005089

Reference epigenome OB56_N_PreA_mRNA-Seq data generated from KEP study

A OB56_N_PreA_mRNA-Seq paired end data for Preadipocytes(fat)

Dataset EGAD00001003486

Cancer Alliance RNA-Seq total RNA

Total RNA transcriptome profiling by high-throughput for individualized cancer interpretation

Dataset EGAD00001006235

ChIPseq data

ChIPseq data for H3K4me1 and H3K9me3 in HT29; H3K4me1, H3K27me3, H3K9me3, H3K36me3 in LoVo.

Dataset EGAD00001003258

Dataset for "Genomic landscape of oral cancers" (Illumina WGS)

Dataset EGAD00001004356

nccRCC targeted exome sequencing of 375 genes

Targeted exome sequencing of 375 genes

Dataset EGAD00001001047

HipSci - Usher Syndrome - Exome Sequencing - July 2017

Dataset EGAD00001003528

Reference epigenome ADMSC07 h3k4me1 ChIP-Seq data generated from KEP study

ADMSC07 h3k4me1 ChIP-Seq paired end data

Dataset EGAD00001007391

MPNST exome and genome

This is the complete dataset (exome and genome) for the EGAS00001000974 study.

Dataset EGAD00001001040

McGill EMC Release 4 for assay "H3K9me3"

Dataset EGAD00001001299

15x WGS HELIC MANOLIS

15x whole genome sequencing in samples from the Cretan Greek isolate collection HELIC MANOLIS

Dataset EGAD00001001897

CONTAGIOUS trial - COVID-19 16S metadata

Study metadata, containing the clinical information on samples and patients

Dataset EGAD00001008006

Dataset of PPB

Whole exome sequencing and miRNA-seq data of PPB.

Dataset EGAD00001000822

CD4 T-Cell RNA-Seq

Dataset EGAD00001002687

Whole-genome sequencing

Variant calls from whole-genome sequencing of Ly1-07 using Complete Genomics paired-end sequencing service.

Dataset EGAD00001004783

McGill EMC Release 4 for assay "H3K4me1"

Dataset EGAD00001001296

WGS data for Glioblastoma (EGAS00001003953, H016)

Whole genome sequencing data for 20 human glioblastoma patients.

Dataset EGAD00001006545

McGill EMC Release 4 for assay "H3K36me3"

Dataset EGAD00001001295

Dataset for "Genomic landscape of oral cancers" (CGI WGS)

Dataset EGAD00001004339

BLUEPRINT: DNaseI-seq for monocytes

DNaseI-seq for monocytes

Dataset EGAD00001000674

McGill EMC Release 4 for assay "H3K4me3"

Dataset EGAD00001001297

R code

R code to run analyses on anonymized data from ABACUS for IMvigor010 ctDNA publication.

Dataset EGAD00001007652

McGill EMC Release 4 in tissue "kidney"

Dataset EGAD00001001287

DATA FILES FOR Histone-NSD2_RNASeq

Dataset EGAD00001000655

Reference epigenome IPS05_X_NPC_WGBS data generated from KEP study

A IPS05_X_NPC_WGBS paired end data for Neural progenitor cells(Nestin)

Dataset EGAD00001003477

DIPG alignments

Whole genome alignments of DIPG patients

Dataset EGAD00001000814

Modern Aboriginal Australians WGS

BAM files for high-throughput whole genome sequence data of 17 modern Aboriginal Australians

Dataset EGAD00001004492

Whole genome sequencing of familial isolated oesophagus atresia.

Then individuals from three families segregating esophagus atresia.

Dataset EGAD00001006092

WGS data of plasma samples from healthy individuals

WGS data of plasma samples from healthy individuals (N=29)

Dataset EGAD00001006421

DATA FILES FOR GRUBER SJAMLM7 RNASEQ

Dataset EGAD00001003135

FUNGAL INFECTION IN NEURAL TISSUE FROM AMYOTROPHIC LATERAL SCLEROSIS

Sequence data from fungal infection isolated from neural tissue in ALS patients.

Dataset EGAD00001003341

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