Search Results - EGA European Genome-Phenome Archive

Whole-genome sequencing

Variant calls from whole-genome sequencing of Ly1-07 using Complete Genomics paired-end sequencing service.

Dataset EGAD00001004783

Reference epigenome ADMSC07 h3k4me1 ChIP-Seq data generated from KEP study

ADMSC07 h3k4me1 ChIP-Seq paired end data

Dataset EGAD00001007391

CONTAGIOUS trial - COVID-19 16S metadata

Study metadata, containing the clinical information on samples and patients

Dataset EGAD00001008006

GWAS genotype data of Japanese COVID-19 cases

GWAS genotype data of 2,393 Japanese COVID-19 cases.

Dataset EGAD00001008957

RNAseq metadata

Meta-data/patient information for the bulk RNAseq data

Dataset EGAD00001008815

CD4 T-Cell RNA-Seq

Dataset EGAD00001002687

Maastricht Irritable Bowel Syndrome metagenomic sequencing

Metagenomic shotgun sequencing of Irritable bowel syndrome patients and matched controls

Dataset EGAD00001002668

WGS data for Glioblastoma (EGAS00001003953, H016)

Whole genome sequencing data for 20 human glioblastoma patients.

Dataset EGAD00001006545

RCRF release 1

Rare Cancer Research Foundation: leiomyosarcoma, large cell neuroendorcrine carcinoma, clear cell carcinoma

Dataset EGAD00001010199

PacBio medulloblastoma datasets

PacBio data from 5 medulloblastoma tumor-normal pairs. The data consists of BAM files aligned using NGMLR

Dataset EGAD00001010852

TGL49_HBC sWGS

Shallow whole genome sequencing of plasma samples from healthy control patients.

Dataset EGAD00001010000

UK10K_NEURO_ASD_TAMPERE REL-2013-04-20

Dataset EGAD00001000437

UK10K_NEURO_FSZNK REL-2013-04-20

Dataset EGAD00001000439

Carcinoid study - WES dataset

Fernandez-Cuesta et al, 2014, Nature Communication, Whole exome sequencing data set

Dataset EGAD00001000820

NSCLC WGS

NSCLC WGS.

Dataset EGAD00001000888

McGill EMC Release 4 for assay "H3K27ac"

Dataset EGAD00001001298

HipSci - Usher Syndrome - Exome Sequencing - July 2017

Dataset EGAD00001003528

MPNST exome and genome

This is the complete dataset (exome and genome) for the EGAS00001000974 study.

Dataset EGAD00001001040

ChIPseq data

ChIPseq data for H3K4me1 and H3K9me3 in HT29; H3K4me1, H3K27me3, H3K9me3, H3K36me3 in LoVo.

Dataset EGAD00001003258

McGill EMC Release 4 for assay "H3K9me3"

Dataset EGAD00001001299

15x WGS HELIC MANOLIS

15x whole genome sequencing in samples from the Cretan Greek isolate collection HELIC MANOLIS

Dataset EGAD00001001897

Dataset of PPB

Whole exome sequencing and miRNA-seq data of PPB.

Dataset EGAD00001000822

McGill EMC Release 4 for assay "H3K4me1"

Dataset EGAD00001001296

Familial Breast cancer dataset

Illumina HiSeqXTen platform sequencing data of whole genome libraries prepared from 156 matched tumour-normal samples from 78 donors

Dataset EGAD00001004494

McGill EMC Release 4 for assay "H3K36me3"

Dataset EGAD00001001295

Reference epigenome IPS06_X_ENeuron_WGBS data generated from KEP study

A IPS06_X_ENeuron_WGBS paired end data for Early neuron cells(Tuj1)

Dataset EGAD00001003478

BLUEPRINT: DNaseI-seq for monocytes

DNaseI-seq for monocytes

Dataset EGAD00001000674

Dataset for "Genomic landscape of oral cancers" (CGI WGS)

Dataset EGAD00001004339

OT2_Illumina_WGS_CONT

Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort)

Dataset EGAD00001003371

Reference epigenome OB56_N_PreA_mRNA-Seq data generated from KEP study

A OB56_N_PreA_mRNA-Seq paired end data for Preadipocytes(fat)

Dataset EGAD00001003486

McGill EMC Release 4 in tissue "kidney"

Dataset EGAD00001001287

20180221_EGA_OESO

Illumina platform sequencing of whole genome libraries prepared from normal, Barrett's oesophagus and oesophageal cancer samples from 44 donors

Dataset EGAD00001003996

DATA FILES FOR Histone-NSD2_RNASeq

Dataset EGAD00001000655

McGill EMC Release 4 for assay "H3K4me3"

Dataset EGAD00001001297

DIPG alignments

Whole genome alignments of DIPG patients

Dataset EGAD00001000814

Reference epigenome IPS05_X_NPC_WGBS data generated from KEP study

A IPS05_X_NPC_WGBS paired end data for Neural progenitor cells(Nestin)

Dataset EGAD00001003477

Modern Aboriginal Australians WGS

BAM files for high-throughput whole genome sequence data of 17 modern Aboriginal Australians

Dataset EGAD00001004492

HipSci - Hypertrophic Cardiomyopathy - Exome Sequencing - July 2017

Dataset EGAD00001003523

DATA FILES FOR GRUBER SJAMLM7 RNASEQ

Dataset EGAD00001003135

FUNGAL INFECTION IN NEURAL TISSUE FROM AMYOTROPHIC LATERAL SCLEROSIS

Sequence data from fungal infection isolated from neural tissue in ALS patients.

Dataset EGAD00001003341

Genomic analysis of Japanese gastric cancer

fastq of 345 Japanese gastric cancer

Dataset EGAD00001004051

Dataset for "Genomic landscape of oral cancers" (Illumina WGS)

Dataset EGAD00001004356

UK10K_NEURO_FSZ REL-2013-04-20

Dataset EGAD00001000615

Pseudogene RNAseq

RNA sequencing to validate findings of somatic pseudogenes acquired during cancer development

Dataset EGAD00001000732

RNA sequencing of Resistant BCC samples.

Dataset EGAD00001000881

nccRCC targeted exome sequencing of 375 genes

Targeted exome sequencing of 375 genes

Dataset EGAD00001001047

McGill EMC Release 4 for assay "H3K27me3"

Dataset EGAD00001001294

Anaplastic Meningioma V3 cancer gene panel

Investigation into causal genes underlying anaplastic meningioma

Dataset EGAD00001001430

LGG Epilepsy Cohort RNA-Seq

Dataset EGAD00001001666

LLNEXT Pilot VLP sequencing

This dataset contains sequencing data from VLP-enriched fecal microbiome from LLNEXT project

Dataset EGAD00001011291

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