Search Results - EGA European Genome-Phenome Archive

Reference epigenome CKD25_C_Podo_mRNA-Seq data generated from KEP study

A CKD25_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

Dataset EGAD00001003483

RNA sequencing data to study "A biobank of patient-derived pediatric braintumor models"

RNA sequencing data for the PDOX model EPD-613FH

Dataset EGAD00001003573

Liquid Biopsy by NGS show differences in CRC stage

Exome sequencing from cfDNA blood samples. 30 sets of 2x76 Illumina reads in Fastq format.

Dataset EGAD00001004307

ChIP-Seq files for PCGP ATRX study

ChIP-Seq files for PCGP ATRX study paper titled "MYCN Amplification and ATRX Mutations are Incompatible in Neuroblastoma"

Dataset EGAD00001004429

Pancreatic organoid - case samples

This dataset contains 31 pancreatic organoid samples used in the 'organoid data of pancreatic cancers ' study

Dataset EGAD00001004528

HIPO blastemal Wilms (nephroblastoma) RNA sequencing samples

HIPO blastemal Wilms (nephroblastoma) characterisation of tumor driving gene expression events

Dataset EGAD00001000993

Targeted deep sequencing of somatic mutations

We used targeted deep sequencing to accurately establish the allele frequencies of the mutations identified by exome sequencing

Dataset EGAD00001000763

SFHS pedigrees

Deep (>25x mean coverage) whole genome sequencing on 5-10 families drawn from the Scottish Family Health Study with four or more children.

Dataset EGAD00001001214

Reference epigenome CKD24_C_Podo_mRNA-Seq data generated from KEP study

A CKD24_C_Podo_mRNA-Seq paired end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

Dataset EGAD00001003482

McGill EMC Release 4 in tissue "Brodmann (1909) area 44"

Dataset EGAD00001001285

HipSci - Healthy Normals - Exome Sequencing - April 2015

Dataset EGAD00001001437

Genentech gastric tumor sequencing

Exome-seq, RNA-Seq, SNP array profiling of gastric tumor samples.

Dataset EGAD00001000815

Illumina HiSeq 2000

Three files of patients 20, 23 and 25 with WGS done on Illumina HiSeq 2000. For research purpose and authorised user only.

Dataset EGAD00001003438

PACA-CA RNASeq fastq files

Fastq files for PACA-CA RNA Seq analysis, for DCC release 27

Dataset EGAD00001003972

STREP GENE Study Genome-wide Genotyping by Illumina Array

Genotyping of 43 cases of invasive GAS infection by Illumina HumanCore-24 array and Illumina Global Screening Array.

Dataset EGAD00001004558

Reference epigenome OB57_D_PreA_smRNA-Seq data generated from KEP study

A OB57_D_PreA_smRNA-Seq single end data for Preadipocyte(fat)

Dataset EGAD00001003496

HipSci - Bardet-Biedl Syndrome - RNA Sequencing - July 2017

Dataset EGAD00001003531

McGill EMC Release 4 in tissue "Brodmann (1909) area 11"

Dataset EGAD00001001284

RNA-Seq Pair End

RNA analysis of two patients 11 and 15 with WGS done on Illumina HiSeq2000. For research purpose and authorised user only.

Dataset EGAD00001003429

HipSci - Bardet-Biedl Syndrome - Exome Sequencing - October 2016

Dataset EGAD00001003161

raw fastq file from 10x genomics sequencing

RNA samples of bone marrow and cord blood were sequenced by 10x genomics platform.

Dataset EGAD00001004200

Amplicon sequencing data from organoids of colorectal cancer patients.

The dataset includes 13 bam files. Each bam file is a different colorectal cancer patient organoid.

Dataset EGAD00001004313

Reference epigenome CKD24_C_Podo_smRNA-Seq data generated from KEP study

A CKD24_C_Podo_smRNA-Seq single end data for Podocytes(CD90(-) Podocalyxin(+), kidney)

Dataset EGAD00001003498

Cancer-associated genome-wide hypomethylation and copy number aberrations

Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing

Dataset EGAD00001001093

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