22938 results for "ega"

in 39.78 milliseconds.

• UK10K_RARE_FINDWG REL-2013-03-06

  UK10K_RARE_FINDWG REL-2013-03-06

  Dataset EGAD00001000803

• Reference epigenome Islet-derived-MSC01 input ChIP-Seq data generated from KEP study

  Islet-derived-MSC01 input ChIP-Seq paired end data

  Dataset EGAD00001007408

• Epi-Tax targeted sequencing

  Sequencing of 350 cancer genes in BC samples from patients treated with either Epirubicin or Paclitaxel monotherapy in the neoadjuvant setting.

  Dataset EGAD00001000812

• Reference epigenome Islet-derived-MSC02 h3k27me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC02 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007410

• Reference epigenome Islet-derived-MSC02 h3k36me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC02 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007411

• Reference epigenome Islet-derived-MSC02 h3k4me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC02 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007413

• Reference epigenome Islet-derived-MSC02 h3k9me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC02 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007414

• Reference epigenome Islet-derived-MSC03 h3k27me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC03 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007417

• Reference epigenome Islet-derived-MSC03 h3k4me1 ChIP-Seq data generated from KEP study

  Islet-derived-MSC03 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007425

• Reference epigenome Islet-derived-MSC03 h3k4me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC03 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007426

• Reference epigenome Islet-derived-MSC03 h3k9me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC03 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007427

• Reference epigenome Islet-derived-MSC04 h3k4me1 ChIP-Seq data generated from KEP study

  Islet-derived-MSC04 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007432

• Reference epigenome Islet-derived-MSC03 input ChIP-Seq data generated from KEP study

  Islet-derived-MSC03 input ChIP-Seq paired end data

  Dataset EGAD00001007428

• Reference epigenome Islet-derived-MSC04 h3k27ac ChIP-Seq data generated from KEP study

  Islet-derived-MSC04 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007429

• MutWP1: CRUK Grand Challenge Mutographs of Cancer: kidney (2019-03-26)

  This dataset contains all the data available for this study on 2019-03-26.

  Dataset EGAD00001004867

• Reference epigenome Islet-derived-iPSC01 h3k27ac ChIP-Seq data generated from KEP study

  Islet-derived-iPSC01 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007436

• Reference epigenome Islet-derived-iPSC01 h3k27me3 ChIP-Seq data generated from KEP study

  Islet-derived-iPSC01 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007437

• Reference epigenome Islet-derived-iPSC01 h3k36me3 ChIP-Seq data generated from KEP study

  Islet-derived-iPSC01 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007438

• Reference epigenome Islet-derived-iPSC01 h3k4me3 ChIP-Seq data generated from KEP study

  Islet-derived-iPSC01 h3k4me3 ChIP-Seq paired end data

  Dataset EGAD00001007440

• Reference epigenome Islet-derived-iPSC01 h3k9me3 ChIP-Seq data generated from KEP study

  Islet-derived-iPSC01 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007441

• Reference epigenome Islet-derived-iPSC01 input ChIP-Seq data generated from KEP study

  Islet-derived-iPSC01 input ChIP-Seq paired end data

  Dataset EGAD00001007442

• Reference epigenome Islet-derived-iPSC02 h3k27ac ChIP-Seq data generated from KEP study

  Islet-derived-iPSC02 h3k27ac ChIP-Seq paired end data

  Dataset EGAD00001007443

• Reference epigenome Islet-derived-iPSC02 h3k9me3 ChIP-Seq data generated from KEP study

  Islet-derived-iPSC02 h3k9me3 ChIP-Seq paired end data

  Dataset EGAD00001007448

• Reference epigenome Islet-derived-iPSC02 input ChIP-Seq data generated from KEP study

  Islet-derived-iPSC02 input ChIP-Seq paired end data

  Dataset EGAD00001007449

• Expressed fusion transcripts in rare bone tumours

  mRNA-Seq on total RNA from primary osteoblastomas and phosphaturic mesenchymal tumours, focussing on fusion transcript expression

  Dataset EGAD00001000990

• Lung Progression versus Regression Whole Genome Sequencing

  Around 50 samples of pre-invasive lung cancer lesions showing subsequent clinical and pathological progression or regression

  Dataset EGAD00001001271

• McGill EMC Release 4 in tissue "venous blood" for cell type "T cell"

  McGill EMC Release 4 in tissue "venous blood" for cell type "T cell"

  Dataset EGAD00001001283

• R code

  R code to run analyses on anonymized data from IMvigor010 ctDNA publication.

  Dataset EGAD00001007654

• McGill EMC Release 4 in tissue "fat pad" for cell type "fat cell"

  McGill EMC Release 4 in tissue "fat pad" for cell type "fat cell"

  Dataset EGAD00001001277

• Cell lines with telomere fusion-induced rearrangements

  Whole-genome somatic rearrangement and point mutation analysis in cell lines with induced telomere fusions.

  Dataset EGAD00001001629

• TPM matrix

  TPM matrices of counts from RNAseq data for IMvigor010 from bulk pre-treatment tumors.

  Dataset EGAD00001007653

• ALI culture bronchial cells and alveolar lung surgical resection scRNA-Seq

  ALI culture bronchial cells and alveolar lung surgical resection scRNA-Seq

  Dataset EGAD00001006185

• Illumina_WXS_T-XEN

  Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample

  Dataset EGAD00001002102

• Whole genome sequencing and genotyping of samples from BFMOS (Mossi from Burkina faso)

  Whole genome sequencing and genotyping of samples from BFMOS (Mossi from Burkina faso)

  Dataset EGAD00001005011

• ORCADES 15x (2019-07-23)

  15x whole genome sequencing in samples from the isolated population of Orkney. This dataset contains all the data available for this study on 2019-07-23.

  Dataset EGAD00001005194

• SCRNA10X_SA_CHIP0006_001

  Transcriptome profiling by high-throughput sequencing for single cells for library SCRNA10X_SA_CHIP0006_001 1 samples; filetype=fastq

  Dataset EGAD00001006460

• SCRNA10X_SA_CHIP0080_001

  Transcriptome profiling by high-throughput sequencing for single cells for library SCRNA10X_SA_CHIP0080_001 1 samples; filetype=fastq

  Dataset EGAD00001006461

• SCRNA10X_SA_CHIP0149_002

  Transcriptome profiling by high-throughput sequencing for single cells for library SCRNA10X_SA_CHIP0149_002 1 samples; filetype=fastq

  Dataset EGAD00001006468

• SCRNA10X_SA_CHIP0150_001

  Transcriptome profiling by high-throughput sequencing for single cells for library SCRNA10X_SA_CHIP0150_001 1 samples; filetype=fastq

  Dataset EGAD00001006469

• SCRNA10X_SA_CHIP0150_002

  Transcriptome profiling by high-throughput sequencing for single cells for library SCRNA10X_SA_CHIP0150_002 1 samples; filetype=fastq

  Dataset EGAD00001006470

• SCRNA10X_SA_CHIP0152_001

  Transcriptome profiling by high-throughput sequencing for single cells for library SCRNA10X_SA_CHIP0152_001 1 samples; filetype=fastq

  Dataset EGAD00001006471

• Bulk exome sequencing of primary GBM - SF 10360

  We performed bulk exome-seq on a primary GBM and a blood sample from SF10360

  Dataset EGAD00001002274

• SCRNA10X_SA_CHIP0142_003

  Transcriptome profiling by high-throughput sequencing for single cells for library SCRNA10X_SA_CHIP0142_003 1 samples; filetype=fastq

  Dataset EGAD00001006465

• RNA data for Glioblastoma (EGAS00001003953, H016)

  RNA data for human glioblastoma patients, EGAS00001003953. 64 human samples, 2 cell lines (LN229, ZH487).

  Dataset EGAD00001006547

• RNA-seq data for de-methylation of FOXP3-TSDR study

  22 RNA-seq samples of ex-vivo (TN and Treg), cultured Treg, TET1 and untreated mCherry-MOCK

  Dataset EGAD00001006865

• HV31 - MGI CoolMPS short-read sequencing

  MGI CoolMPS short-read sequencing data for individual HV31 generated using DNA from peripheral blood mononuclear cells, to a sequencing depth of ~57×.

  Dataset EGAD00001007048

• RnaSeq samples for 25 UPS samples

  Whole Transcriptiome Rnaseq of 25 UPS samples - raw FastQ sequences, 125x2 nc Paired End Reads, min 30M PE, HiSEq technology

  Dataset EGAD00001006355

• Transcriptomic profiling of human small intestine macrophage and DC subsets

  Using low input SMART-seq protocol, the whole transcriptome of human small intestine macrophage subtypes is characterized.

  Dataset EGAD00001003581

• Reference epigenome Islet-derived-MSC01 h3k36me3 ChIP-Seq data generated from KEP study

  Islet-derived-MSC01 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007404

• SCRNA10X_SA_CHIP0146_002

  Transcriptome profiling by high-throughput sequencing for single cells for library SCRNA10X_SA_CHIP0146_002 1 samples; filetype=fastq

  Dataset EGAD00001006466

• FGFP dual-index 16S sequencing (N=1054)

  16S sequencing data (dual-index) from 1054 Flemish Gut Flora Project (FGFP) samples

  Dataset EGAD00001004449

• BS-seq in plasma of CRC patients

  We performed whole genome bisulfite sequencing of plasma DNA in 11 colorectal cancer patients to study the colonic DNA in plasma.

  Dataset EGAD00001004568

• RNAseq files for CHEN WTPDX RNASEQ

  RNAseq files for CHEN WTPDX RNASEQ paper titled "Forty-Five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor"

  Dataset EGAD00001004507

• RNA-Seq of tumors

  RNA-Seq on an Ion Torrent Proton of corresponding tumor material of two metastasized breast cancer patients (Breast7, Breast13).

  Dataset EGAD00001002216

• RNA-Seq Illumina GAII dataset

  RNA-Seq Illumina GAII dataset for the TraIT cell-line use case (added reverse and forward reads).

  Dataset EGAD00001001626

• Reference epigenome Islet-derived-MSC02 h3k4me1 ChIP-Seq data generated from KEP study

  Islet-derived-MSC02 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007412

• Reference epigenome Islet-derived-iPSC02 h3k36me3 ChIP-Seq data generated from KEP study

  Islet-derived-iPSC02 h3k36me3 ChIP-Seq paired end data

  Dataset EGAD00001007445

• Reference epigenome Islet-derived-iPSC02 h3k4me1 ChIP-Seq data generated from KEP study

  Islet-derived-iPSC02 h3k4me1 ChIP-Seq paired end data

  Dataset EGAD00001007446

• HIPO blastemal Wilms (nephroblastoma) CHIP sequencing samples

  HIPO blastemal Wilms (nephroblastoma) characterisation of tumor driving events caused by differential SIX1 binding of the SIX1 Q177R mutatns

  Dataset EGAD00001000992

• Whole genome sequencing of Japanese HCCs

  Unaligned bam of 31 samples derived from primary tumor

  Dataset EGAD00001001262

• WGS data from a GBM patient PT-WP9124

  WGS data from a GBM patient PT-WP9124

  Dataset EGAD00001004264

• WGS sequence data from cell lines BT-54/BT-88/BT-92/BT-142

  WGS sequence data from cell lines BT-54/BT-88/BT-92/BT-142

  Dataset EGAD00001003920

• ICGC Korean Breast Cancer Project

  A comprehensive characterisation and analysis of human breast cancers through whole-genome sequencing.

  Dataset EGAD00001001322

• HIV exome pilot, exome data part 1 GRCh37_53

  exome sequence data for 49 HIV elite long term non-progressors and rapid progressors. Partial dataset (overlap with EGAD00001000087) of raw BAMs mapped to GRCh37_53.

  Dataset EGAD00001000047

• MiSeq-High Coverage

  Seven files of patients 3, 21, 29, 30, 31, 32 and 33 with WGS done on Illumina MiSeq with high coverage. For research purpose and authorised user only.

  Dataset EGAD00001003436

• Comparison of HCC cell lines and primary HCCs

  Whole genome sequencing (30X) using Hiseq X TEN on 4 HCC cell lines, primary HCCs and early-passage PDCs

  Dataset EGAD00001001995

• Copy number profiling of pleura samples and respective tumors

  Low-coverage whole genome sequencing for the establishment of genomewide copy number alterations in pleura effusions and respective primary tumors

  Dataset EGAD00001003273

• GENOMIC INSTABILITY IN MISMATCH REPAIR DEFICIENT COLORECTAL CANCER WES MSI Colorectal Cancer

  This dataset contains Whole Exome Sequencing of 47 MSI colorectal cancers (CRCs) and paired adjacent normal mucosa

  Dataset EGAD00001004550

• WES files for Newman MAP3K8 melanoma

  WES files for Newman MAP3K8 melanoma paper titled "Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas"

  Dataset EGAD00001004566

• Exome sequencing of tumor samples

  We utilized exome sequencing for DNA obtained from saliva (germline DNA) and the four spatially separated tumor foci and 3 corresponding lymph node metastases

  Dataset EGAD00001000762

• Illumina_WGS_T-XEN

  Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample

  Dataset EGAD00001002091

• 30X WGS sequencing of 100 individuals from the general Greek population

  This project entailed generation of high depth WGS (30x) of 100 individuals from the general Greek population.

  Dataset EGAD00001001440

• Processed RNAseq data

  This dataset contains log2(TPM + 1) transformed counts for the 823 tumor samples profiled by RNAseq.

  Dataset EGAD00001006618

• Raw FASTq files

  This dataset contains FASTq files for tumors from the 823 patients profiled by RNAseq.

  Dataset EGAD00001006619

• DNA sequencing for gastric cancer ascites

  Whole-exome sequencing (WES) was performed on a total of 34 PC specimens, with 15 cases having matched gDNAs extracted from blood.

  Dataset EGAD00001004364

• Organoid Derivation Project TGS: Release 1

  Targeted gene sequencing of cancer driver genes to determine the driver mutations present in newly-derived cancer organoid models

  Dataset EGAD00001004368

• Sequencing .bam files

  Sequencing of untreated pancreatic cancer metastases and primary tumor sections.

  Dataset EGAD00001003153

• Amplicon–Based Metagenomic Analysis.

  Amplicon-based fungal metagenomic sequencing for the identification of fungal species in brain tissue from Alzheimer's disease. The study consists in 14 samples, sequenced using Illumina's paired-end technology.

  Dataset EGAD00001003196

• HiSeqXTen sequencing of tumour-normal sample pairs from three mesothelioma patients

  Aligned, merged and deduplicated BAM files from HiSeqXTen sequencing of six samples: matched tumour-normal pairs from three melanoma patients.

  Dataset EGAD00001003222

• Whole-genome sequencing (WGS) data of Gastric adenocarcinoma and adjacent normal tissues

  High-coverage WGS sequencing of DNA samples from 45pairs GCs was performed on the Illumina HiSeq X Ten System.

  Dataset EGAD00001003431

• Genome - MBD4-deficient AML

  Genome sequencing at diagnosis and post induction for WEHI-AML-1 and WEHI-AML-2. Whole genome sequencing was performed on an Illumina HiSeq X Ten.

  Dataset EGAD00001003568

• Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks

  Whole genome sequencing data on 10 human cancer cell lines

  Dataset EGAD00001003824

• WGS files for Newman MAP3K8 melanoma

  WGS files for Newman MAP3K8 melanoma paper titled "Clinical genome sequencing uncovers potentially targetable truncations and fusions of MAP3K8 in spitzoid and other melanomas"

  Dataset EGAD00001004579

• Gene expression from human iPSC derived cortical neurons

  Gene expression from icas9 human iPSC derived cortical neurons treated with and without doxycycline

  Study EGAS00001004782

• Organoid_Derivation_Project__TGS

  Sequencing of tissue samples and their derived organoids from oesophageal, pancreatic and colorectal cancer patients.

  Study EGAS00001002221

• Benchmarking_CRISPR_Whole_genome_Drop_out_Screen___B_S

  This study is a benchmarking exercise to explore potential source of variation between different CRISPR drop out libraries.

  Study EGAS00001002931

• RNASeq files for Roussel MBPRP

  RNASeq files for Roussel paper titled "Combination of CDK4/6 with BET-bromodomain and PI3K/mTOR inhibitors in medulloblastoma in vitro and in vivo"

  Dataset EGAD00001008842

• RNA-seq analysis of human primary keratinocytes and skin

  Bulk and single cell RNA-seq analysis of human keratinocyte and human skin

  Study EGAS00001002981

• Normal sample for patient SA221

  Whole genome sequencing of normal sample for triple negative breast cancer patient SA221

  Dataset EGAD00001009362

• Tumour sample for patient SA425

  Whole genome sequencing of tumour sample for triple negative breast cancer patient SA425

  Dataset EGAD00001009356

• MMR (DNA mismatch repair) pathway in human samples

  This data are related to the manuscript by Germano et al. Ms2016-04-06029

  Study EGAS00001002694

• Whole genome and whole transcriptome sequencing of Hepatosplenic T Cell Lymphoma tumor.

  Whole genome and whole transcriptome sequencing of Hepatosplenic T Cell Lymphoma tumor.

  Study EGAS00001003775

• RNA sequencing of 12 NSCLC samples from 4 patients at MDACC

  Multi-region RNA sequencing of 12 NSCLC samples from 4 patients at MDACC

  Study EGAS00001005951

• Whole exome sequencing of PMBCL

  Whole exome sequencing of 8 PMBCL samples and paired normal samples and 14 unpaired PMCL samples.

  Study EGAS00001006235

• Germline sequencing

  Detection of SNVs/indels in the germline of pediatric cancer patients with a focus on CHEK2 germline variants.

  Study EGAS00001006254

• Germline sequencing

  Detection of SNVs/ indels in the germline of pediatric cancer patients with a focus on CHEK2 germline variants

  Study EGAS00001006705

• RNAseq of paired primary and locally recurrent IDHwt GBM

  Perform RNAseq of paired primary and locally recurrent IDHwt GBM following standard treatment.

  Study EGAS00001006871

• Paired diagnostic and relapse medulloblastoma sequencing

  Whole exome and targeted panel sequencing in a cohort of paired diagnostic and relapse medulloblastoma samples.

  Study EGAS00001007120

• HCA_Immune_Adult_CIDP_RNA_Managed_Access

  Leveraging single-cell sequencing technologies to shed light on the immune aetiology of chronic inflammatory demyelinating polyradiculoneuropathy (CIDP)

  Study EGAS00001007419

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0169_001

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0169_001 for Follicular lymphoma patient sample TFRIPAIR4_FL

  Dataset EGAD00001010217