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• dataset1

  Contains control and PXR KD human small intestinal organoids

  Dataset EGAD00001009785

• DKFZ-HIPO Data Access Committee of Heidelberg Center for Personalized Oncology

  Dac EGAC00001000452

• Genetic drivers of epigenetic and transcriptional variation of human immune responses to infection (WGS and WGBS)

  WGS and WGBS data from monocyte-derived macrophages that were infected with Influenza A virus strain PR8WT, or a matching non-infected control.

  Dataset EGAD00001008359

• Data Access Committee of Biobank Lab, Department of Oncobiology and Epigenetics, University of Lodz

  Dac EGAC50000000080

• DAC Pediatric tumors SJD IRB

  Samples from pediatric tumors from Sant Joan de Déu, sequenced and processed by IRB Barcelona. Contact Information Núria López-Bigas bbglab@irbbarcelona.org

  Dac EGAC50000000118

• Sharma/Busskamp Retinal Organoid

  DAC controlling a transcriptomic data set from retinal organoids generated with 10x chromium data, part of a publication between Sharma and Busskamp (DOI: 10.1016/j.stem.2025.12.013)

  Dac EGAC50000000487

• MPNST study - 10X single nucleus DNA data

  10X single nucleus DNA data of one MPNST patient, including one primary and five recurrence regions

  Dataset EGAD50000002567

• Transcriptomics dataset from human prefrontal cortex tissue - ALS vs CTR

  Fastq files and BAM files

  Dataset EGAD50000000467

• 450K_DKFZ_ACC_CJ

  primary human ACC and normal samples using 450K

  Dataset EGAD00010001298

• RNA-sequençing of 21 inflammatory hepatocellular adenomas and 1 non-tumoral sample

  Dataset EGAD00001005284

• Whole genome sequencing data

  Whole genome sequencing reads consisting of paired end Fastq and aligned bam files from pediatric medulloblastoma samples.

  Dataset EGAD00001004115

• Somatic cancer gene mutation screening

  Sequencing of colorectal tumors and normal tissue using Ion AmpliSeq Cancer Hotspot Panel V2

  Dataset EGAD00001001010

• aplastic anemia

  Clonal hematopoiesis was investigated in patients with aplastic anemia using next-generation sequencing and single-nucleotide polymorphism (SNP) array-based karyotyping.

  Dataset EGAD00001001256

• DIPG_ICR_WGS

  Whole genome sequencing of 20 tumour and normal pairs of diffuse intrinsic pontine glioma (DIPG)

  Dataset EGAD00001000705

• CSC DDR dataset

  CSC DDR dataset contains 4 bam files of two pairs of colorectal CSCs sensitive and resistant to ATR or CHK1 inhibitor

  Dataset EGAD00001006774

• WGS of IP-DLBCLs

  This data set includes bam files of WGS of 36 paired lymphomas in immune-privileged sites and normal controls.

  Dataset EGAD00001007753

• CS Baby Biome gut microbiome

  This dataset contains metagenomic sequencing of stool samples of babies from CS Baby Biome project, and their mothers

  Dataset EGAD00001011367

• Ancient Yakuts genomes and metagenomes

  Read data and bam alignments for 124 ancient yakuts

  Dataset EGAD50000001903

• Whole-Genome Sequencing of 128 Ashkenazi Jewish individuals

  We sequenced 128 individuals of Ashkenazi Jewish ancestry. All individuals were controls in other studies: (1) Longevity (Gil Atzmon's lab; Albert Einstein College of Medicine), n=74. (2) Parkinson's disease (Lorraine Clark's lab; Columbia University Medical Center), n=54. Whole-genome, high-coverage (50x) sequencing was performed by Complete Genomics in 2012 and 2013.

  Study EGAS00001000664

• Bulk RNA sequencing data of peripheral blood mononuclear cells obtained from 7 ATL patients and 9 HTLV-1-infected asymptomatic carriers.

  Bulk RNA sequencing (RNA-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 7 ATL patients (9 samples) and 9 HTLV-1-infected asymptomatic carriers.

  Dataset EGAD00001007018

• Orthotopic murine Group 3 medulloblastoma in C57Bl/6 mice treated with sham or craniospinal irradiation

  Mice with medulloblastoma (Group 3) were treated with sham (isofluorane and imaging xray) or CSI as described by Abbas et al (2022). Total RNA was isolated with RNeasy Plus Mini Kit (Qiagen), library preparation (SureSelect, Agilent), rRNA depletion (Ribo-Zero Plus, Illumina) and sequencing were carried out by GenomicsWA or Australian Genome Research Facility. Libraries were sequenced on NovaSeq 6000 S1 flow cells as paired-end 150bp reads (Illumina).

  Dataset EGAD00001008510

• Mutation and Microsatellite Burden Predict Response to PD-1 Inhibition in Children with Germline DNA Replication Repair Deficiency: An Observational Registry Study

  This dataset contains raw data from polyA RNAseq, hybrid capture target TCR panel data, and bam files from whole exome sequencing on 39 tumors with matched germline blood.

  Dataset EGAD00001008036

• WGS from KeyLargo patients

  WGS from KeyLargo from paired tumor (tissue) and normal (blood) samples

  Dataset EGAD50000001744

• RNA-seq data of CRC-PDX tumors

  We obtained bulk RNAseq data of CRC-PDX tumors and performed molecular subtype classification.

  Dataset EGAD50000000850

• Affymetrix_HTA2.0

  Primary renal cell carcinoma (RCC) and RCC metastases by Affymetrix GeneChip HTA 2.0

  Dataset EGAD00010001589