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• WES from two human osteosarcoma with two samples each from the corresponding cell line

  WES from two human osteosarcoma with two samples each from the corresponding cell line, BAM files

  Dataset EGAD00001005370

• WGS data set used in the study, 2 samples

  WGS data set used in the study, 2 samples

  Dataset EGAD00001007966

• Targeted_EMSeq___Development

  Development of a targeted methylation assay to determine the cell-type composition of a sample.

  Study EGAS00001007202

• Variant calling for UPST-SCCHN3 cohort

  Tumor versus Germline variant calling on UPST-SCCHN3 cohort

  Dataset EGAD50000002178

• NANOPORE_TALL_t_14_16_translocation

  Nanopore sequencing for patients with t(14;16) translocated T-ALL

  Dataset EGAD50000001785

• WXS_TALL_t_14_16_translocation

  Whole exome-sequencing for patients with t(14;16) translocated T-ALL.

  Dataset EGAD50000001783

• WGS_TALL_t_14_16_translocation

  WGS data for patients with t(14;16) translocated T-ALL.

  Dataset EGAD50000001782

• WGS data for medulloblastoma samples (MDT-AP)

  WGS data of medulloblastoma tumor/control pairs.

  Dataset EGAD00001003125

• GM18507 direct library preparation (DLP) single-cell genomes

  Microfluidic direct library preparation (DLP) single-cell whole-genome BAM files for near-diploid immortalized lymphoblastoid cell line GM18507.

  Dataset EGAD00001003148

• Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - barretts_1

  Samples from Ross Innes et. al 2015 - doi:10.1038/ng.3357

  Dataset EGAD00001001394

• Low-depth whole genome sequencing across multiple isolated populations

  Isolated populations have unique population genetics characteristics that can help boost power in genetic association studies for complex traits. Leveraging these advantageous characteristics requires an in-depth understanding of parameters that have shaped sequence variation in isolates. This study performs a comprehensive investigation of these parameters using low-depth whole genome sequencing (WGS) across multiple isolates.

  Dataset EGAD00001002014

• Whole genome sequencing data of high-grade serous ovarian cancer samples (set 12)

  The dataset contains whole genome sequencing data of 17 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 46 samples are either fresh frozen tumour samples or blood samples. The files provided are paired fastq files.

  Dataset EGAD50000000441

• Whole genome sequencing data of high-grade serous ovarian cancer samples (set 13)

  The dataset contains whole genome sequencing data of 32 high-grade serous carcinoma (HGSC) patients sequenced with Novoseq 6000. The 82 samples are either fresh frozen tumour samples or blood samples. The files provided are paired fastq files.

  Dataset EGAD50000000442

• Detecting PKD1 variants in Polycystic Kidney Disease patients by single-molecule long-read sequencing

  Cohort of 19 ADPKD patients characterized using long-read sequencing. The variant identification provided high sensitivity in identifying PKD1 pathogenic variants, with a diagnostic yield of 94.7%. This dataset includes all sequencing data (BAM files) of the 19 patients, in addition to their raw variants (unfiltered) obtained from the long-read sequencing as well as Sanger sequencing (VCF file).

  Dataset EGAD00001003103

• MiRNome_pituitary_adenoma

  Small RNA (<100 bases in length) were purified from total RNA using miRNeasy kit (Qiagen), then sequenced. Libraries were prepared at the Genomics Platform of the Cochin Institute, following the TruSeq small RNA protocol (Illumina), starting from 1 µg of high quality total RNA. Single read (1 × 75 bp) sequencing was performed on a Nextseq 500 platform (Illumina). FASTQ sequences were aligned on miRBase v.2052, then counted with STAR (v.2.5.2a).

  Dataset EGAD00001004998

• Paired RNA-Seq of four patients with advanced Parathyroid carcinoma (PC)

  Paired RNA-Seq of four patients with advanced Parathyroid carcinoma (PC). The library was prepared using the Illumina TruSeq stranded mRNA Kit, the sequencing was done either on an Illumina HiSeq 4000 or on Illumina NovaSeq 6000.

  Dataset EGAD00001009730

• Leeds Melanoma Cohort (LMC) gene expression study

  Array-based profiling (whole genome DASL HT12.4, Illumina Inc) in over 700 FFPE tumour blocks from the population-based Leeds Melanoma cohort recruited in the North of England, with a long follow up. Data used in tumour immune micro-environment investigation (Nsengimana et al 2018, J Clin Invest doi: 10.1172/JCI95351).

  Study EGAS00001002922

• A110632A

  Whole genome sequencing for single cells for library A110632A 1151 cells; filetype=bam

  Dataset EGAD00001007094

• A110632B

  Whole genome sequencing for single cells for library A110632B 892 cells; filetype=bam

  Dataset EGAD00001007095

• A118833A

  Whole genome sequencing for single cells for library A118833A 919 cells; filetype=bam

  Dataset EGAD00001007096

• A118833B

  Whole genome sequencing for single cells for library A118833B 1147 cells; filetype=bam

  Dataset EGAD00001007097

• A118845B

  Whole genome sequencing for single cells for library A118845B 1209 cells; filetype=bam

  Dataset EGAD00001007098

• A118869A

  Whole genome sequencing for single cells for library A118869A 1165 cells; filetype=bam

  Dataset EGAD00001007099

• A118869B

  Whole genome sequencing for single cells for library A118869B 1124 cells; filetype=bam

  Dataset EGAD00001007100

• A95626A

  Whole genome sequencing for single cells for library A95626A 1040 cells; filetype=bam

  Dataset EGAD00001007103

• A95634B

  Whole genome sequencing for single cells for library A95634B 1335 cells; filetype=bam

  Dataset EGAD00001007105

• A95646A

  Whole genome sequencing for single cells for library A95646A 1071 cells; filetype=bam

  Dataset EGAD00001007106

• A95653B

  Whole genome sequencing for single cells for library A95653B 1342 cells; filetype=bam

  Dataset EGAD00001007107

• A95663B

  Whole genome sequencing for single cells for library A95663B 1364 cells; filetype=bam

  Dataset EGAD00001007108

• A95675A

  Whole genome sequencing for single cells for library A95675A 668 cells; filetype=bam

  Dataset EGAD00001007109

• A95731B

  Whole genome sequencing for single cells for library A95731B 1307 cells; filetype=bam

  Dataset EGAD00001007110

• A96115B

  Whole genome sequencing for single cells for library A96115B 1201 cells; filetype=bam

  Dataset EGAD00001007112

• A96118A

  Whole genome sequencing for single cells for library A96118A 1193 cells; filetype=bam

  Dataset EGAD00001007113

• A96130B

  Whole genome sequencing for single cells for library A96130B 1267 cells; filetype=bam

  Dataset EGAD00001007114

• A96178A

  Whole genome sequencing for single cells for library A96178A 788 cells; filetype=bam

  Dataset EGAD00001007115

• A96178B

  Whole genome sequencing for single cells for library A96178B 846 cells; filetype=bam

  Dataset EGAD00001007116

• A96181C

  Whole genome sequencing for single cells for library A96181C 1216 cells; filetype=bam

  Dataset EGAD00001007117

• A96225B

  Whole genome sequencing for single cells for library A96225B 959 cells; filetype=bam

  Dataset EGAD00001007119

• A96225C

  Whole genome sequencing for single cells for library A96225C 1034 cells; filetype=bam

  Dataset EGAD00001007120

• A96240A

  Whole genome sequencing for single cells for library A96240A 1493 cells; filetype=bam

  Dataset EGAD00001007121

• A98172A

  Whole genome sequencing for single cells for library A98172A 898 cells; filetype=bam

  Dataset EGAD00001007123

• A98256A

  Whole genome sequencing for single cells for library A98256A 1372 cells; filetype=bam

  Dataset EGAD00001007124

• A98256B

  Whole genome sequencing for single cells for library A98256B 1437 cells; filetype=bam

  Dataset EGAD00001007125

• A98257B

  Whole genome sequencing for single cells for library A98257B 1286 cells; filetype=bam

  Dataset EGAD00001007126

• A98258B

  Whole genome sequencing for single cells for library A98258B 1357 cells; filetype=bam

  Dataset EGAD00001007127

• A98274B

  Whole genome sequencing for single cells for library A98274B 1295 cells; filetype=bam

  Dataset EGAD00001007128

• A98282A

  Whole genome sequencing for single cells for library A98282A 1198 cells; filetype=bam

  Dataset EGAD00001007129

• A98283A

  Whole genome sequencing for single cells for library A98283A 1137 cells; filetype=bam

  Dataset EGAD00001007130

• A98285A

  Whole genome sequencing for single cells for library A98285A 1422 cells; filetype=bam

  Dataset EGAD00001007131

• A98295B

  Whole genome sequencing for single cells for library A98295B 1381 cells; filetype=bam

  Dataset EGAD00001007132