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• WGS and WXS for mismatch repair-deficient human colon organoids

  Whole genome/exome sequencing to detect spontaneous acquired mutations in mismatch repair-deficient human colon organoids.

  Dataset EGAD50000000159

• Genotyping data of 81 patients with multiple sclerosis and other neurological diseases

  This dataset consists of raw unimputed genotype data for 81 individuals with multiple sclerosis (n=33) and other neurological disease (n=48).

  Dataset EGAD50000000183

• GSA reference

  reference whole exome sequence serving as a reference of individuals. Includes the raw GSa files and the called variants in vcf format merge for all individuals (S1-S5).

  Dataset EGAD50000000481

• bfast CohortD OAPL

  ctDNA mutation calls (one mutation per sample per line) for BFAST Cohort D including mutation-level data like coding change, allele frequency, etc.

  Dataset EGAD50000000148

• Dataset for NSCLC samples

  This dataset contains 10x scRNA sequencing data of 16 NSCLC samples. Sequencing was performed on Illumina HiSeq 4000. The sequencing was always paired.

  Dataset EGAD50000000185

• Reconstruction oral cavity tumor evolution through brush biopsy

  A dataset of samples analyzed for the publication "Reconstructing oral cavity tumor evolution through brush biopsy", Springer Nature, DOI: 10.1038/s41598-024-72946-3

  Dataset EGAD50000000856

• RNAseq data

  Bulk RNAseq data for IMbrave151 (N = 96), including raw counts, transcript per million (TPM), and voom transformed values.

  Dataset EGAD50000000568

• Altered Blood and Keratinocyte microRNA/transfer RNA Fragment Profiles Related to Fibromyalgia Syndrome and its Severity

  We show dysregulated microRNA and tRNA fragment profiles related to FMS pathopyhsiology and opening new perspectives for FMS diagnostics and symptom monitoring.

  Dac EGAC50000000247

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0187_002

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0167_003 for Diffuse large B-cell lymphoma patient sample TFRIPAIR10

  Dataset EGAD50000001372

• ctDNA sample level analysis

  This table summarizes Guardant 360 ctDNA variant summary statistics including frequency of variant types for each sample included in this analysis.

  Dataset EGAD50000001341

• Raw RNA sequencing of hepatoblastoma PDX cell line HB-303-LEF

  This dataset contains raw RNA sequencing data for hepatoblastoma PDX cell line HB-303-LEF

  Dataset EGAD50000001358

• Sequencing data for oesophageal and related samples - cell-lines (WGS)

  Dataset EGAD00001015467

• Policy to access RNAseq Patient Derived Sézary syndrome cells

  This is the policy for accessing the RNAseq raw data associated to the project 'Diverse transcriptomic and mutational patterns but limited functional pathway alterations in patient-derived SS cells'

  Dac EGAC50000000693

• McGill Reproductive Genetics Data Access Committee

  Committee at RI-MUHC (Slim Lab) that reviews requests for controlled human genetic/phenotypic data generated in reproductive genetics/infertility studies. Ensures requests comply with participant consent, ethics approvals, and institutional policies.

  Dac EGAC50000000775

• CRC and UC WES samples

  This is the dataset used to produce results for the report "NOUS-209 off-the-shelf immunotherapy has the potential to hit primary and metachronous colorectal and urothelial cancer in Lynch syndrome"

  Dac EGAC50000000782

• NICOLA Epigenetic Data Wave 1 - Beta values

  Beta values generated from Illumina EPIC methylation array data for a subset of NICOLA Wave 1 samples.

  Dataset EGAD50000001965

• Transcriptomics for UPST-SCCHN3 cohort

  Transcriptomics of Tumor samples on UPST-SCCHN3 cohort

  Dataset EGAD50000002179

• ATAC_TALL_t_14_16_translocation

  ATAC-sequence for patients with t(14;16) translocated T-ALL and control T-ALL patients

  Dataset EGAD50000001784

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0169_001

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0169_001 for Follicular lymphoma patient sample TFRIPAIR4_FL

  Dataset EGAD00001010217

• NICHE - DNA-seq of MMR proficient and MMR deficient early stage colon cancers

  The dataset includes 174 FASTQ files from paired-end WXS sequencing on Illumina HiSeq2500 for 39 patients.

  Dataset EGAD00001006041

• RnaSeq samples for 25 UPS samples

  Whole Transcriptiome Rnaseq of 25 UPS samples - raw FastQ sequences, 125x2 nc Paired End Reads, min 30M PE, HiSEq technology

  Dataset EGAD00001006355

• HV31 - MGI standard short-read sequencing

  MGI standard short-read sequencing data for individual HV31 generated using DNA from peripheral blood mononuclear cells, to a sequencing depth of ~57×.

  Dataset EGAD00001007044

• CBD-RAW-CLINVAR: Clinical metadata

  Anonymised patient metadata and associated data dictionary. For further information regarding this dataset, please contact Alexander Mentzer at contact@combat.ox.ac.uk.

  Dataset EGAD00001007931

• RNA-seq data for de-methylation of FOXP3-TSDR study

  22 RNA-seq samples of ex-vivo (TN and Treg), cultured Treg, TET1 and untreated mCherry-MOCK

  Dataset EGAD00001006865

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0178_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0178_001A for Follicular lymphoma patient sample TFRIPAIR8_FL

  Dataset EGAD00001010220

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0172_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0172_001 for Triple negative breast cancer sample SA609X6XB03447

  Dataset EGAD00001011217

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0163_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0163_002 for Triple negative breast cancer sample SA609X7XB03510

  Dataset EGAD00001011218

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0206_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0206_001 for Triple negative breast cancer sample SA535X10XB03693

  Dataset EGAD00001011236

• 10x Single Cell Gene Expression Library TENX048

  10x Single Cell Gene Expression library TENX048 for Triple negative breast cancer sample SA535X5XB02895

  Dataset EGAD00001011222

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0184_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0184_001 for Triple negative breast cancer sample SA535X7XB03305

  Dataset EGAD00001011227

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0146_004

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0146_004 for Triple negative breast cancer sample SA535X7XB03305

  Dataset EGAD00001011228

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0071_000

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0071_000 for Triple negative breast cancer sample SA1035X5XB03015

  Dataset EGAD00001011239

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0076_000

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0076_000 for Triple negative breast cancer sample SA1035X5XB03021

  Dataset EGAD00001011240

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0142_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0142_002 for Triple negative breast cancer sample SA1035X4XB02879

  Dataset EGAD00001011238

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0168_003

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0168_003 for Follicular lymphoma patient sample TFRI_Cont_3

  Dataset EGAD00001010205

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0164_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0164_002 for Triple negative breast cancer sample SA530X3XB03295

  Dataset EGAD00001011250

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0182_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0182_002 for Triple negative breast cancer sample SA535X8XB03431

  Dataset EGAD00001011230

• DLP+ Single Cell Genomic Library A98208

  DLP+ Single Cell Genomic Library A98208 for Diffuse large B-cell lymphoma patient sample TFRIPAIR10_DLBCL

  Dataset EGAD00001010244

• TPM matrix

  TPM matrices of counts from RNAseq data for IMvigor010 from bulk pre-treatment tumors.

  Dataset EGAD00001007653

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0152_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0152_002 for Triple negative breast cancer sample SA609X6XB03404

  Dataset EGAD00001011216

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0172_002

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0172_002 for Triple negative breast cancer sample SA609X7XB03554

  Dataset EGAD00001011220

• 10x Single Cell Gene Expression Library SCRNA10X_SA_CHIP0162_001

  10x Single Cell Gene Expression library SCRNA10X_SA_CHIP0162_001 for Triple negative breast cancer sample SA1035X8XB03420

  Dataset EGAD00001011248

• RNA-seq data for HCC patients from Y90+Nivolumab trial

  This dataset includes RNA-seq fastq files of pre-treatment and on-treatment samples from 28 patients

  Dataset EGAD00001010132

• ORCADES 15x (2019-07-23)

  15x whole genome sequencing in samples from the isolated population of Orkney. This dataset contains all the data available for this study on 2019-07-23.

  Dataset EGAD00001005194

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0170_003

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0170_003 for Follicular lymphoma patient sample TFRI_Cont_5

  Dataset EGAD00001010207

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0183_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0183_001A for Follicular lymphoma patient sample TFRIPAIR9_FL

  Dataset EGAD00001010221

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0187_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0187_001A for Follicular lymphoma patient sample TFRIPAIR10_FL

  Dataset EGAD00001010222

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0197_001A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0197_001A for Follicular lymphoma patient sample TFRIPAIR12_FL

  Dataset EGAD00001010224

• HV31 - MGI CoolMPS short-read sequencing

  MGI CoolMPS short-read sequencing data for individual HV31 generated using DNA from peripheral blood mononuclear cells, to a sequencing depth of ~57×.

  Dataset EGAD00001007048

• 10x Single Cell Gene Expression Library SCRNA10X_CS_CHIP0197_003A

  10x Single Cell Gene Expression library SCRNA10X_CS_CHIP0197_003A for Follicular lymphoma patient sample TFRI_Cont_12

  Dataset EGAD00001010213