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• Data access committee for "Detection of brain cancer using genome-wide cell-free DNA fragmentomes"

  The data access committee for “ Detection of brain cancer using genome-wide cell-free DNA fragmentomes”. The DAC is comprised of Drs. Dimitrios Mathios, Jillian Phallen, Victor Velculescu, Robert Scharpf, Noushin Niknafs, and Shashikant Koul, and can be contacted at skoul3@jh.edu.

  Dac EGAC50000000605

• Long-read methylation analysis of breast cancer using the enzymatic base conversion and the nanopore sequencing

  Long-read methylation analysis by a nanopore sequnecer PromethION was performed using breast samples collected from breast cacner patients.

  Study JGAS000265

• Osteosarcoma_multiregion_characterisation___WGS

  Characterisation of osteosarcoma across multiple regions of primary tumours, local recurrences and metastases using whole genome sequencing, methylation and transcriptomics. This study contains the WGS data.

  Study EGAS00001008241

• Osteosarcoma_multiregion_characterisation___Methylation

  Characterisation of osteosarcoma across multiple regions of primary tumours, local recurrences and metastases using whole genome sequencing, methylation and transcriptomics. This study contains the methylation data.

  Study EGAS00001008243

• WGS dataset for malignant pleural and peritoneal mesothelioma

  This dataset contains Whole Genome sequencing data of pleural and peritoneal mesothelioma. The number of samples is 40. Sequencing was performed on Illumina NovaSeq 6000 and Illumina NovaSeqXPlus. The sequencing was always paired.

  Dataset EGAD50000001343

• Extracellular Vesicle miRNA Sequencing with Qiaseq and NextSeq 550

  This dataset includes small RNA sequencing data from extracellular vesicle-derived RNA. miRNA libraries were prepared using the Qiaseq miRNA Library Kit with adaptations for low RNA input and sequenced on the Illumina NextSeq 550 platform

  Dataset EGAD50000001504

• This dataset contains the cram files from the whole Exome sequencing

  Exome Sequencing of Healthy and M. Heamophilum Infected Participants

  Dataset EGAD50000001565

• Bulk WES Fastq Files for 103 Samples of Cornell-NCI DLBCL Genomic Project

  Paired-read fastq files were derived from standard Illumina WES NGS sequencing for 103 DLBCL biopsy samples. This is one of three datasets associated with the multi-platform NGS sequencing efforts of the Cornell-NCI DLBCL genomic study.

  Dataset EGAD50000001747

• Whole Exome Sequencing of Bipolar cases and controls on a cohort from Umea, Sweden

  Whole Exome Sequencing of 924 Bipolar cases and matched controls performed at the Broad Institute on a cohort from Umea, Sweden. The exome used Twist capture and samples were sequenced on Illumina HiSeqX machines producing cram files

  Dataset EGAD50000000470

• FMT metagenomics triads and plasma metabolomics

  These are the metagenomic datasets of 29 FMT traids with corresponding plasma metabolomics. Data for each triad consists of metagenomics for baseline, post FMT and corresponding donor. Clinical data concerning the glucose rate of disappearance and blood pressure are available as phenotypes.

  Dataset EGAD50000000599