Oncotrack DAC

Contact Information

Marie-Laure Yaspo
yaspo@molgen.mpg.de

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This DAC controls 64 datasets

Dataset ID	Description	Technology	Samples
EGAD00001002072	RNAseq on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample	Illumina HiSeq 2000	23
EGAD00001002073	RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	12
EGAD00001002074	RNAseq on Illumina HiSeq2000/2500 of WNT reporter of PDO culture derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	3
EGAD00001002075	RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	1
EGAD00001002076	RNAseq of Patient-derived xenograft derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	19
EGAD00001002077	RNAseq on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample	Illumina HiSeq 2000	87
EGAD00001002078	RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	28
EGAD00001002079	RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	1
EGAD00001002080	RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	37
EGAD00001002081	RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	4
EGAD00001002082	Whole-genome sequencing on Illumina HiSeq2000/2500 of Blood EDTA	Illumina HiSeq 2000	69
EGAD00001002083	Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue	Illumina HiSeq 2000	2
EGAD00001002084	Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample	Illumina HiSeq 2000	23
EGAD00001002085	Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	12
EGAD00001002086	Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	1
EGAD00001002087	Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	19
EGAD00001002088	Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample	Illumina HiSeq 2000	87
EGAD00001002089	Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	25
EGAD00001002090	Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	1
EGAD00001002091	Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	38
EGAD00001002092	Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	5
EGAD00001002093	Whole-exome sequencing on Illumina HiSeq2000/2500 of Blood EDTA	Illumina HiSeq 2000	33
EGAD00001002094	Whole-exome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue	Illumina HiSeq 2000	2
EGAD00001002095	Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample	Illumina HiSeq 2000	14
EGAD00001002096	Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	12
EGAD00001002097	Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	1
EGAD00001002098	Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample	Illumina HiSeq 2000	19
EGAD00001002099	Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample	Illumina HiSeq 2000	55
EGAD00001002100	Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	25
EGAD00001002101	Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	1
EGAD00001002102	Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	38
EGAD00001002103	Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample	Illumina HiSeq 2000	5
EGAD00001002104	Whole-exome sequencing on AB 5500xl Genetic Analyzer of Blood EDTA	AB 5500xl Genetic Analyzer	76
EGAD00001002105	Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer metastasis sample	AB 5500xl Genetic Analyzer AB 5500xl-W Genetic Analysis System	16
EGAD00001002106	Whole-exome sequencing on AB 5500xl Genetic Analyzer of Patient-derived xenograft derived from colorectal cancer metastasis sample	AB 5500xl Genetic Analyzer	1
EGAD00001002107	Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer primary tumor sample	AB 5500xl Genetic Analyzer AB 5500xl-W Genetic Analysis System	66
EGAD00001002883	RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer sample of a validation cohort of 60 PDX	Illumina HiSeq 2000	60
EGAD00001002884	RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample at early/late passages	Illumina HiSeq 2000	8
EGAD00001003362	RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (EPO2_cohort)	Illumina HiSeq 2000	49
EGAD00001003363	Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (EPO2_cohort)	Illumina HiSeq 2000	114
EGAD00001003364	RNAseq on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort)	Illumina HiSeq 2000	4
EGAD00001003365	RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort)	Illumina HiSeq 2000	1
EGAD00001003366	RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort)	Illumina HiSeq 2000	10
EGAD00001003367	RNAseq on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort)	Illumina HiSeq 2000	7
EGAD00001003368	RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample (OT2_cohort)	Illumina HiSeq 2000	1
EGAD00001003369	RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort)	Illumina HiSeq 2000	13
EGAD00001003370	Whole-genome sequencing on Illumina HiSeq2000/2500 of Blood EDTA (OT2_cohort)	Illumina HiSeq 2000	10
EGAD00001003371	Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort)	Illumina HiSeq 2000	1
EGAD00001003372	Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort)	Illumina HiSeq 2000	4
EGAD00001003373	Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort)	Illumina HiSeq 2000	1
EGAD00001003374	Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort)	Illumina HiSeq 2000	8
EGAD00001003375	Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort)	Illumina HiSeq 2000	7
EGAD00001003376	Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort)	Illumina HiSeq 2000	12
EGAD00001003377	Whole-exome sequencing on Illumina HiSeq2000/2500 of Blood EDTA (OT2_cohort)	Illumina HiSeq 2000	10
EGAD00001003378	Whole-exome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort)	Illumina HiSeq 2000	1
EGAD00001003379	Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort)	Illumina HiSeq 2000	4
EGAD00001003380	Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort)	Illumina HiSeq 2000	1
EGAD00001003381	Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort)	Illumina HiSeq 2000	10
EGAD00001003383	Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort)	Illumina HiSeq 2000	7
EGAD00001003384	Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort)	Illumina HiSeq 2000	14
EGAD00001003385	Whole-exome sequencing on AB 5500xl Genetic Analyzer of Blood EDTA (OT2_cohort)	AB 5500 Genetic Analyzer	1
EGAD00001003386	Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer primary tumor sample (OT2_cohort)	AB 5500 Genetic Analyzer	1
EGAD00010001161	Oncotrack metastatic samples using 450K. The shared AF analysis files oncotrackDNAmAnalysis.R and oncotrackDNAmBetaScores.txt which were applied for both Oncotrack_450K_tumor (EGAD00010001162) and Oncotrack_450K_metastatic (EGAD00010001161) datasets are included on Oncotrack_450K_tumor (EGAD00010001162) dataset.	Illumina 450K	15
EGAD00010001162	Oncotrack primary tumor samples using 450K. The dataset includes shared AF analysis files oncotrackDNAmAnalysis.R and oncotrackDNAmBetaScores.txt which were applied for both Oncotrack_450K_tumor (EGAD00010001162) and Oncotrack_450K_metastatic (EGAD00010001161) datasets.	Illumina 450K	67