| EGAD00001002081 |
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
4 |
| EGAD00001002087 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
19 |
| EGAD00001002074 |
RNAseq on Illumina HiSeq2000/2500 of WNT reporter of PDO culture derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
3 |
| EGAD00001002086 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
1 |
| EGAD00001002095 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
14 |
| EGAD00001002105 |
Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer metastasis sample |
AB 5500xl Genetic Analyzer; |
16 |
| EGAD00001002103 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
5 |
| EGAD00001002101 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
1 |
| EGAD00001002083 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue |
Illumina HiSeq 2000; |
2 |
| EGAD00001002075 |
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
1 |
| EGAD00001002088 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
87 |
| EGAD00001002073 |
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
12 |
| EGAD00001002092 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
5 |
| EGAD00001002097 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
1 |
| EGAD00001002107 |
Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer primary tumor sample |
AB 5500xl Genetic Analyzer; |
66 |
| EGAD00001002078 |
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
28 |
| EGAD00001002079 |
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
1 |
| EGAD00001002098 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
19 |
| EGAD00001002090 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
1 |
| EGAD00001002100 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
25 |
| EGAD00001002096 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
12 |
| EGAD00001002085 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
12 |
| EGAD00001002091 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
38 |
| EGAD00001002104 |
Whole-exome sequencing on AB 5500xl Genetic Analyzer of Blood EDTA |
AB 5500xl Genetic Analyzer; |
76 |
| EGAD00001002089 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
25 |
| EGAD00010001162 |
Oncotrack primary tumor samples using 450K. The dataset includes shared AF analysis files oncotrackDNAmAnalysis.R and oncotrackDNAmBetaScores.txt which were applied for both Oncotrack_450K_tumor (EGAD00010001162) and Oncotrack_450K_metastatic (EGAD00010001161) datasets. |
Illumina 450K |
67 |
| EGAD00001002883 |
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer sample of a validation cohort of 60 PDX |
Illumina HiSeq 2000;ILLUMINA |
60 |
| EGAD00010001161 |
Oncotrack metastatic samples using 450K. The shared AF analysis files oncotrackDNAmAnalysis.R and oncotrackDNAmBetaScores.txt which were applied for both Oncotrack_450K_tumor (EGAD00010001162) and Oncotrack_450K_metastatic (EGAD00010001161) datasets are included on Oncotrack_450K_tumor (EGAD00010001162) dataset. |
Illumina 450K |
15 |
| EGAD00001002099 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
55 |
| EGAD00001002094 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue |
Illumina HiSeq 2000; |
2 |
| EGAD00001002082 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of Blood EDTA |
Illumina HiSeq 2000; |
69 |
| EGAD00001002084 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
23 |
| EGAD00001002106 |
Whole-exome sequencing on AB 5500xl Genetic Analyzer of Patient-derived xenograft derived from colorectal cancer metastasis sample |
AB 5500xl Genetic Analyzer; |
1 |
| EGAD00001002884 |
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample at early/late passages |
Illumina HiSeq 2000;ILLUMINA |
8 |
| EGAD00001002077 |
RNAseq on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
87 |
| EGAD00001002102 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
38 |
| EGAD00001002072 |
RNAseq on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
23 |
| EGAD00001002076 |
RNAseq of Patient-derived xenograft derived from colorectal cancer metastasis sample |
Illumina HiSeq 2000; |
19 |
| EGAD00001002093 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of Blood EDTA |
Illumina HiSeq 2000; |
33 |
| EGAD00001002080 |
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample |
Illumina HiSeq 2000; |
37 |
| EGAD00001003367 |
RNAseq on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
7 |
| EGAD00001003376 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
12 |
| EGAD00001003371 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
1 |
| EGAD00001003364 |
RNAseq on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
4 |
| EGAD00001003375 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
7 |
| EGAD00001003365 |
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
1 |
| EGAD00001003378 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
1 |
| EGAD00001003377 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of Blood EDTA (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
10 |
| EGAD00001003385 |
Whole-exome sequencing on AB 5500xl Genetic Analyzer of Blood EDTA (OT2_cohort) |
AB 5500 Genetic Analyzer;ABI_SOLID |
1 |
| EGAD00001003386 |
Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer primary tumor sample (OT2_cohort) |
AB 5500 Genetic Analyzer;ABI_SOLID |
1 |
| EGAD00001003379 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
4 |
| EGAD00001003383 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
7 |
| EGAD00001003363 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (EPO2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
114 |
| EGAD00001003362 |
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (EPO2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
49 |
| EGAD00001003369 |
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
13 |
| EGAD00001003374 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
8 |
| EGAD00001003366 |
RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
10 |
| EGAD00001003373 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
1 |
| EGAD00001003381 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
10 |
| EGAD00001003372 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
4 |
| EGAD00001003368 |
RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
1 |
| EGAD00001003370 |
Whole-genome sequencing on Illumina HiSeq2000/2500 of Blood EDTA (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
10 |
| EGAD00001003384 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
14 |
| EGAD00001003380 |
Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort) |
Illumina HiSeq 2000;ILLUMINA |
1 |
