DAC

Oncotrack DAC

Dac ID Contact Person Email Access Information
EGAC00001000469 Marie-Laure Yaspo yaspo [at] molgen [dot] mpg [dot] de No additional information is available

This DAC controls 64 datasets:

Dataset ID Description Technology Samples
EGAD00001002081 RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 4
EGAD00001002087 Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 19
EGAD00001002074 RNAseq on Illumina HiSeq2000/2500 of WNT reporter of PDO culture derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 3
EGAD00001002086 Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 1
EGAD00001002095 Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample Illumina HiSeq 2000; 14
EGAD00001002105 Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer metastasis sample AB 5500xl Genetic Analyzer; 16
EGAD00001002103 Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 5
EGAD00001002101 Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 1
EGAD00001002083 Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue Illumina HiSeq 2000; 2
EGAD00001002075 RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 1
EGAD00001002088 Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample Illumina HiSeq 2000; 87
EGAD00001002073 RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 12
EGAD00001002092 Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from Patient-derived xenograft derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 5
EGAD00001002097 Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 1
EGAD00001002107 Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer primary tumor sample AB 5500xl Genetic Analyzer; 66
EGAD00001002078 RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 28
EGAD00001002079 RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 1
EGAD00001002098 Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 19
EGAD00001002090 Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from PDO culture derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 1
EGAD00001002100 Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 25
EGAD00001002096 Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 12
EGAD00001002085 Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 12
EGAD00001002091 Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 38
EGAD00001002104 Whole-exome sequencing on AB 5500xl Genetic Analyzer of Blood EDTA AB 5500xl Genetic Analyzer; 76
EGAD00001002089 Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 25
EGAD00010001162 Oncotrack primary tumor samples using 450K. The dataset includes shared AF analysis files oncotrackDNAmAnalysis.R and oncotrackDNAmBetaScores.txt which were applied for both Oncotrack_450K_tumor (EGAD00010001162) and Oncotrack_450K_metastatic (EGAD00010001161) datasets. Illumina 450K 67
EGAD00001002883 RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer sample of a validation cohort of 60 PDX Illumina HiSeq 2000;ILLUMINA 60
EGAD00010001161 Oncotrack metastatic samples using 450K. The shared AF analysis files oncotrackDNAmAnalysis.R and oncotrackDNAmBetaScores.txt which were applied for both Oncotrack_450K_tumor (EGAD00010001162) and Oncotrack_450K_metastatic (EGAD00010001161) datasets are included on Oncotrack_450K_tumor (EGAD00010001162) dataset. Illumina 450K 15
EGAD00001002099 Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample Illumina HiSeq 2000; 55
EGAD00001002094 Whole-exome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue Illumina HiSeq 2000; 2
EGAD00001002082 Whole-genome sequencing on Illumina HiSeq2000/2500 of Blood EDTA Illumina HiSeq 2000; 69
EGAD00001002084 Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample Illumina HiSeq 2000; 23
EGAD00001002106 Whole-exome sequencing on AB 5500xl Genetic Analyzer of Patient-derived xenograft derived from colorectal cancer metastasis sample AB 5500xl Genetic Analyzer; 1
EGAD00001002884 RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample at early/late passages Illumina HiSeq 2000;ILLUMINA 8
EGAD00001002077 RNAseq on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample Illumina HiSeq 2000; 87
EGAD00001002102 Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 38
EGAD00001002072 RNAseq on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample Illumina HiSeq 2000; 23
EGAD00001002076 RNAseq of Patient-derived xenograft derived from colorectal cancer metastasis sample Illumina HiSeq 2000; 19
EGAD00001002093 Whole-exome sequencing on Illumina HiSeq2000/2500 of Blood EDTA Illumina HiSeq 2000; 33
EGAD00001002080 RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample Illumina HiSeq 2000; 37
EGAD00001003367 RNAseq on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 7
EGAD00001003376 Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 12
EGAD00001003371 Whole-genome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 1
EGAD00001003364 RNAseq on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 4
EGAD00001003375 Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 7
EGAD00001003365 RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 1
EGAD00001003378 Whole-exome sequencing on Illumina HiSeq2000/2500 of normal colon control tissue (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 1
EGAD00001003377 Whole-exome sequencing on Illumina HiSeq2000/2500 of Blood EDTA (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 10
EGAD00001003385 Whole-exome sequencing on AB 5500xl Genetic Analyzer of Blood EDTA (OT2_cohort) AB 5500 Genetic Analyzer;ABI_SOLID 1
EGAD00001003386 Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer primary tumor sample (OT2_cohort) AB 5500 Genetic Analyzer;ABI_SOLID 1
EGAD00001003379 Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 4
EGAD00001003383 Whole-exome sequencing on Illumina HiSeq2000/2500 of colorectal cancer primary tumor sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 7
EGAD00001003363 Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (EPO2_cohort) Illumina HiSeq 2000;ILLUMINA 114
EGAD00001003362 RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (EPO2_cohort) Illumina HiSeq 2000;ILLUMINA 49
EGAD00001003369 RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 13
EGAD00001003374 Whole-genome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 8
EGAD00001003366 RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 10
EGAD00001003373 Whole-genome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 1
EGAD00001003381 Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 10
EGAD00001003372 Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 4
EGAD00001003368 RNAseq on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer primary tumor sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 1
EGAD00001003370 Whole-genome sequencing on Illumina HiSeq2000/2500 of Blood EDTA (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 10
EGAD00001003384 Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer primary tumor sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 14
EGAD00001003380 Whole-exome sequencing on Illumina HiSeq2000/2500 of PDO culture derived from colorectal cancer metastasis sample (OT2_cohort) Illumina HiSeq 2000;ILLUMINA 1