RNA-sequencing of HCC of metastatic and de novo origin
Dataset consists of tumors and matched non-tumor livers from 22 patients with multifocal hepatocellular carcinoma. Tissues were obtained from at least two distinct tumor nodules undergoing liver biopsies. Note: refer to the supplementary table of the manuscript for patient IDs and further clinical data.
- 02/09/2026
- 121 samples
- DAC: EGAC50000000917
- Technology: Illumina HiSeq 2500
- Archive: European Genome-phenome Archive (EGA)
Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel)
Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel) Access is granted only to qualified researchers affiliated with a bona fide research institution, for a clearly described research project, and subject to review and approval by the Data Access Committee "Basel Liver Biopsy Biobank". Application requirements: A completed and signed Data Access Request and Agreement, a brief project description, and the applicant’s CV (and/or relevant track record) must be provided. Permitted use: Data may be used only for the approved research project and for the approved duration. Any new purpose requires a new request and approval. Privacy and confidentiality: Data are pseudonymised. Applicants must not attempt to re-identify individuals and must protect confidentiality at all times. Data security: Data must be handled within an institutional IT environment with appropriate access controls, malware protection, and secure backup procedures. No onward transfer: Data must not be shared or transferred outside the recipient institution or to external collaborators without prior written approval; external collaborators may require a separate agreement. Publication and acknowledgement: Publications and presentations resulting from use of the data must acknowledge the data controllers as specified in the agreement. Incident reporting: Any security breach leading to disclosure must be reported without undue delay and at the latest within 72 hours. Governing law: Switzerland (Basel-City jurisdiction), as specified in the agreement.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001003115 | Cancer Genomics | |
| EGAS00001005074 | Other | |
| EGAS00001005662 | Other | |
| EGAS50000002057 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF00002048554 | bam | 8.9 GB | Report |
|
| EGAF00005502316 | bam | 3.4 GB | Report |
|
| EGAF00005502319 | bam | 2.7 GB | Report |
|
| EGAF00005502323 | bam | 3.3 GB | Report |
|
| EGAF00005502325 | bam | 3.0 GB | Report |
|
| EGAF00005502336 | bam | 2.4 GB | Report |
|
| EGAF00005502338 | bam | 3.9 GB | Report |
|
| EGAF00005502339 | bam | 3.1 GB | Report |
|
| EGAF00005502340 | bam | 3.0 GB | Report |
|
| EGAF00005502341 | bam | 3.4 GB | Report |
|
| EGAF00005502342 | bam | 4.1 GB | Report |
|
| EGAF00005502343 | bam | 4.3 GB | Report |
|
| EGAF00005502344 | bam | 2.8 GB | Report |
|
| EGAF00005502345 | bam | 3.5 GB | Report |
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| EGAF00005502348 | bam | 2.8 GB | Report |
|
| EGAF00005502349 | bam | 3.6 GB | Report |
|
| EGAF00005502355 | bam | 4.6 GB | Report |
|
| EGAF00005502356 | bam | 3.9 GB | Report |
|
| EGAF00005502357 | bam | 4.2 GB | Report |
|
| EGAF00005502358 | bam | 2.5 GB | Report |
|
| EGAF00005502359 | bam | 2.5 GB | Report |
|
| EGAF00005502360 | bam | 3.0 GB | Report |
|
| EGAF00005502361 | bam | 4.3 GB | Report |
|
| EGAF00005502363 | bam | 3.2 GB | Report |
|
| EGAF00005502374 | bam | 4.4 GB | Report |
|
| EGAF00005502389 | bam | 2.4 GB | Report |
|
| EGAF00005502390 | bam | 2.8 GB | Report |
|
| EGAF00005502399 | bam | 4.5 GB | Report |
|
| EGAF00005502400 | bam | 2.5 GB | Report |
|
| EGAF00005502403 | bam | 2.9 GB | Report |
|
| EGAF00005502417 | bam | 2.7 GB | Report |
|
| EGAF00005502426 | bam | 2.5 GB | Report |
|
| EGAF00005502429 | bam | 2.6 GB | Report |
|
| EGAF00005502430 | bam | 2.6 GB | Report |
|
| EGAF00005502431 | bam | 3.9 GB | Report |
|
| EGAF00005502433 | bam | 4.0 GB | Report |
|
| EGAF00005502434 | bam | 2.8 GB | Report |
|
| EGAF00005502435 | bam | 2.5 GB | Report |
|
| EGAF00005502442 | bam | 3.3 GB | Report |
|
| EGAF00005502444 | bam | 2.8 GB | Report |
|
| EGAF00005502445 | bam | 2.8 GB | Report |
|
| EGAF00005502448 | bam | 3.1 GB | Report |
|
| EGAF00005502449 | bam | 2.9 GB | Report |
|
| EGAF00005502454 | bam | 2.5 GB | Report |
|
| EGAF00005502456 | bam | 2.5 GB | Report |
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| EGAF00005502459 | bam | 3.3 GB | Report |
|
| EGAF00005502463 | bam | 2.8 GB | Report |
|
| EGAF00005502466 | bam | 3.7 GB | Report |
|
| EGAF00005502482 | bam | 2.5 GB | Report |
|
| EGAF00005502486 | bam | 2.5 GB | Report |
|
| EGAF00005502494 | bam | 20.7 GB | Report |
|
| EGAF00008898647 | bam | 2.7 GB |
|
|
| EGAF00008898650 | bam | 3.0 GB |
|
|
| EGAF00008898653 | bam | 3.8 GB |
|
|
| EGAF00008898683 | bam | 3.7 GB |
|
|
| EGAF00008899122 | bam | 3.4 GB |
|
|
| EGAF00008899128 | bam | 2.9 GB |
|
|
| EGAF00008899140 | bam | 2.6 GB |
|
|
| EGAF00008899141 | bam | 2.6 GB |
|
|
| EGAF00008899144 | bam | 3.1 GB |
|
|
| EGAF00008899155 | bam | 2.5 GB |
|
|
| EGAF00008899160 | bam | 2.9 GB |
|
|
| EGAF00008899164 | bam | 3.0 GB |
|
|
| EGAF00008899165 | bam | 2.9 GB |
|
|
| EGAF00008899167 | bam | 4.1 GB |
|
|
| EGAF00008899170 | bam | 2.7 GB |
|
|
| EGAF00008899174 | bam | 2.9 GB |
|
|
| EGAF00008899175 | bam | 2.5 GB |
|
|
| EGAF00008899177 | bam | 3.5 GB |
|
|
| EGAF00008899180 | bam | 2.6 GB |
|
|
| EGAF00008899184 | bam | 3.6 GB |
|
|
| EGAF00008899185 | bam | 3.3 GB |
|
|
| EGAF00008899187 | bam | 2.9 GB |
|
|
| EGAF00008899188 | bam | 2.6 GB |
|
|
| EGAF00008899189 | bam | 3.3 GB |
|
|
| EGAF00008899191 | bam | 2.5 GB |
|
|
| EGAF00008899192 | bam | 2.4 GB |
|
|
| EGAF00008899194 | bam | 3.5 GB |
|
|
| EGAF00008899195 | bam | 2.5 GB |
|
|
| EGAF00008899198 | bam | 2.9 GB |
|
|
| EGAF00008899199 | bam | 2.7 GB |
|
|
| EGAF00008899200 | bam | 3.3 GB |
|
|
| EGAF00008899201 | bam | 4.1 GB |
|
|
| EGAF00008899202 | bam | 2.5 GB |
|
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| EGAF00008899203 | bam | 3.5 GB |
|
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| EGAF00008899205 | bam | 2.6 GB |
|
|
| EGAF00008899206 | bam | 3.2 GB |
|
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| EGAF00008899207 | bam | 4.2 GB |
|
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| EGAF00008899208 | bam | 2.7 GB |
|
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| EGAF00008899211 | bam | 2.7 GB |
|
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| EGAF00008899212 | bam | 2.9 GB |
|
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| EGAF00008899213 | bam | 2.4 GB |
|
|
| EGAF00008899214 | bam | 3.0 GB |
|
|
| EGAF00008899215 | bam | 3.1 GB |
|
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| EGAF00008899216 | bam | 2.6 GB |
|
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| EGAF00008899217 | bam | 3.0 GB |
|
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| EGAF00008899218 | bam | 3.0 GB |
|
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| EGAF00008899219 | bam | 2.5 GB |
|
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| EGAF00008899220 | bam | 3.3 GB |
|
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| EGAF00008899221 | bam | 2.7 GB |
|
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| EGAF00008899222 | bam | 4.1 GB |
|
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| EGAF00008899223 | bam | 3.5 GB |
|
|
| EGAF00008899224 | bam | 3.1 GB |
|
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| EGAF00008899225 | bam | 2.5 GB |
|
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| EGAF00008899226 | bam | 2.6 GB |
|
|
| EGAF00008899227 | bam | 3.1 GB |
|
|
| EGAF00008899228 | bam | 2.5 GB |
|
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| EGAF00008899229 | bam | 2.7 GB |
|
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| EGAF00008899230 | bam | 3.2 GB |
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| EGAF00008899231 | bam | 2.7 GB |
|
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| EGAF00008899232 | bam | 2.7 GB |
|
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| EGAF00008899233 | bam | 2.7 GB |
|
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| EGAF00008899234 | bam | 2.9 GB |
|
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| EGAF00008899235 | bam | 2.7 GB |
|
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| EGAF00008899236 | bam | 2.7 GB |
|
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| EGAF00008899237 | bam | 2.3 GB |
|
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| EGAF00008899238 | bam | 2.7 GB |
|
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| EGAF00008899239 | bam | 2.4 GB |
|
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| EGAF00008899240 | bam | 2.9 GB |
|
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| EGAF00008899241 | bam | 6.4 GB |
|
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| EGAF00008899242 | bam | 2.8 GB |
|
|
| 121 Files (395.0 GB) | ||||
