Need Help?

RNA-sequencing of HCC of metastatic and de novo origin

Dataset consists of tumors and matched non-tumor livers from 22 patients with multifocal hepatocellular carcinoma. Tissues were obtained from at least two distinct tumor nodules undergoing liver biopsies. Note: refer to the supplementary table of the manuscript for patient IDs and further clinical data.

Request Access

Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel)

Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel) Access is granted only to qualified researchers affiliated with a bona fide research institution, for a clearly described research project, and subject to review and approval by the Data Access Committee "Basel Liver Biopsy Biobank". Application requirements: A completed and signed Data Access Request and Agreement, a brief project description, and the applicant’s CV (and/or relevant track record) must be provided. Permitted use: Data may be used only for the approved research project and for the approved duration. Any new purpose requires a new request and approval. Privacy and confidentiality: Data are pseudonymised. Applicants must not attempt to re-identify individuals and must protect confidentiality at all times. Data security: Data must be handled within an institutional IT environment with appropriate access controls, malware protection, and secure backup procedures. No onward transfer: Data must not be shared or transferred outside the recipient institution or to external collaborators without prior written approval; external collaborators may require a separate agreement. Publication and acknowledgement: Publications and presentations resulting from use of the data must acknowledge the data controllers as specified in the agreement. Incident reporting: Any security breach leading to disclosure must be reported without undue delay and at the latest within 72 hours. Governing law: Switzerland (Basel-City jurisdiction), as specified in the agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003115 Cancer Genomics
EGAS00001005074 Other
EGAS00001005662 Other
EGAS50000002057 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00002048554 bam 8.9 GB Report
EGAF00005502316 bam 3.4 GB Report
EGAF00005502319 bam 2.7 GB Report
EGAF00005502323 bam 3.3 GB Report
EGAF00005502325 bam 3.0 GB Report
EGAF00005502336 bam 2.4 GB Report
EGAF00005502338 bam 3.9 GB Report
EGAF00005502339 bam 3.1 GB Report
EGAF00005502340 bam 3.0 GB Report
EGAF00005502341 bam 3.4 GB Report
EGAF00005502342 bam 4.1 GB Report
EGAF00005502343 bam 4.3 GB Report
EGAF00005502344 bam 2.8 GB Report
EGAF00005502345 bam 3.5 GB Report
EGAF00005502348 bam 2.8 GB Report
EGAF00005502349 bam 3.6 GB Report
EGAF00005502355 bam 4.6 GB Report
EGAF00005502356 bam 3.9 GB Report
EGAF00005502357 bam 4.2 GB Report
EGAF00005502358 bam 2.5 GB Report
EGAF00005502359 bam 2.5 GB Report
EGAF00005502360 bam 3.0 GB Report
EGAF00005502361 bam 4.3 GB Report
EGAF00005502363 bam 3.2 GB Report
EGAF00005502374 bam 4.4 GB Report
EGAF00005502389 bam 2.4 GB Report
EGAF00005502390 bam 2.8 GB Report
EGAF00005502399 bam 4.5 GB Report
EGAF00005502400 bam 2.5 GB Report
EGAF00005502403 bam 2.9 GB Report
EGAF00005502417 bam 2.7 GB Report
EGAF00005502426 bam 2.5 GB Report
EGAF00005502429 bam 2.6 GB Report
EGAF00005502430 bam 2.6 GB Report
EGAF00005502431 bam 3.9 GB Report
EGAF00005502433 bam 4.0 GB Report
EGAF00005502434 bam 2.8 GB Report
EGAF00005502435 bam 2.5 GB Report
EGAF00005502442 bam 3.3 GB Report
EGAF00005502444 bam 2.8 GB Report
EGAF00005502445 bam 2.8 GB Report
EGAF00005502448 bam 3.1 GB Report
EGAF00005502449 bam 2.9 GB Report
EGAF00005502454 bam 2.5 GB Report
EGAF00005502456 bam 2.5 GB Report
EGAF00005502459 bam 3.3 GB Report
EGAF00005502463 bam 2.8 GB Report
EGAF00005502466 bam 3.7 GB Report
EGAF00005502482 bam 2.5 GB Report
EGAF00005502486 bam 2.5 GB Report
EGAF00005502494 bam 20.7 GB Report
EGAF00008898647 bam 2.7 GB
EGAF00008898650 bam 3.0 GB
EGAF00008898653 bam 3.8 GB
EGAF00008898683 bam 3.7 GB
EGAF00008899122 bam 3.4 GB
EGAF00008899128 bam 2.9 GB
EGAF00008899140 bam 2.6 GB
EGAF00008899141 bam 2.6 GB
EGAF00008899144 bam 3.1 GB
EGAF00008899155 bam 2.5 GB
EGAF00008899160 bam 2.9 GB
EGAF00008899164 bam 3.0 GB
EGAF00008899165 bam 2.9 GB
EGAF00008899167 bam 4.1 GB
EGAF00008899170 bam 2.7 GB
EGAF00008899174 bam 2.9 GB
EGAF00008899175 bam 2.5 GB
EGAF00008899177 bam 3.5 GB
EGAF00008899180 bam 2.6 GB
EGAF00008899184 bam 3.6 GB
EGAF00008899185 bam 3.3 GB
EGAF00008899187 bam 2.9 GB
EGAF00008899188 bam 2.6 GB
EGAF00008899189 bam 3.3 GB
EGAF00008899191 bam 2.5 GB
EGAF00008899192 bam 2.4 GB
EGAF00008899194 bam 3.5 GB
EGAF00008899195 bam 2.5 GB
EGAF00008899198 bam 2.9 GB
EGAF00008899199 bam 2.7 GB
EGAF00008899200 bam 3.3 GB
EGAF00008899201 bam 4.1 GB
EGAF00008899202 bam 2.5 GB
EGAF00008899203 bam 3.5 GB
EGAF00008899205 bam 2.6 GB
EGAF00008899206 bam 3.2 GB
EGAF00008899207 bam 4.2 GB
EGAF00008899208 bam 2.7 GB
EGAF00008899211 bam 2.7 GB
EGAF00008899212 bam 2.9 GB
EGAF00008899213 bam 2.4 GB
EGAF00008899214 bam 3.0 GB
EGAF00008899215 bam 3.1 GB
EGAF00008899216 bam 2.6 GB
EGAF00008899217 bam 3.0 GB
EGAF00008899218 bam 3.0 GB
EGAF00008899219 bam 2.5 GB
EGAF00008899220 bam 3.3 GB
EGAF00008899221 bam 2.7 GB
EGAF00008899222 bam 4.1 GB
EGAF00008899223 bam 3.5 GB
EGAF00008899224 bam 3.1 GB
EGAF00008899225 bam 2.5 GB
EGAF00008899226 bam 2.6 GB
EGAF00008899227 bam 3.1 GB
EGAF00008899228 bam 2.5 GB
EGAF00008899229 bam 2.7 GB
EGAF00008899230 bam 3.2 GB
EGAF00008899231 bam 2.7 GB
EGAF00008899232 bam 2.7 GB
EGAF00008899233 bam 2.7 GB
EGAF00008899234 bam 2.9 GB
EGAF00008899235 bam 2.7 GB
EGAF00008899236 bam 2.7 GB
EGAF00008899237 bam 2.3 GB
EGAF00008899238 bam 2.7 GB
EGAF00008899239 bam 2.4 GB
EGAF00008899240 bam 2.9 GB
EGAF00008899241 bam 6.4 GB
EGAF00008899242 bam 2.8 GB
121 Files (395.0 GB)