We performed a second-generation genome-wide association study of 4,533 individuals with celiac disease (cases) and 10,750 control subjects. We genotyped 113 selected SNPs with P(GWAS) < 10(-4) and 18 SNPs from 14 known loci in a further 4,918 cases and 5,684 controls. Variants from 13 new regions reached genome-wide significance (P(combined) < 5 x 10(-8)); most contain genes with immune functions (BACH2, CCR4, CD80, CIITA-SOCS1-CLEC16A, ICOSLG and ZMIZ1), with ETS1, RUNX3, THEMIS and TNFRSF14 having key roles in thymic T-cell selection. There was evidence to suggest associations for a further 13 regions. In an expression quantitative trait meta-analysis of 1,469 whole blood samples, 20 of 38 (52.6%) tested loci had celiac risk variants correlated (P < 0.0028, FDR 5%) with cis gene expression
Genome-wide SNP genotyping data for 102 Pakistani individuals by Illumina HumanOmni2.5-8 array, used in the EGAS00001002558 study
Oral Mucosa transcriptomic data from three HIV+cART patients
DAC-2020-03-26-Lemola (DAC-039)), raw data in EGA, metadata in Harvard Dataverse
This committee oversees access to data generated as part of AML research study at WEHI, ensuring compliance with privacy regulations and ethical standards.
Investigating how the tumour microenvironment regulates glioblastoma cell states using genomic analysis.
This is a continuation of the osteosarcoma work we have undertaken.
Project contains full exome data from 100-150 trios (up to 450 samples)