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• HiC-sequencing in human monocyte differentiation

  This dataset consists of in situ HiC-seq data from human monocytes, monocyte-derived dendritic cells as well as monocyte-derived cells that were subjected to siRNA treatment targeting CTCF or RAD21. In total, the data set includes 42 samples.

  Dataset EGAD00001007955

• Transcriptome sequencing of replication repair deficient brain cancers

  Hypermutant tumors which harbor many somatic mutations may obscure the interpretation of targetable genomic events. This dataset contains transcriptome sequencing from 21 replication repair deficient brain tumor samples as well as healthy controls.

  Dataset EGAD00001006921

• Measurable residual disease in elderly acute myeloid leukemia: results from the PETHEMA-FLUGAZA phase III clinical trial

  In our study, we hypothetyzed that CD34progenitors from cases with undetectable Minimal residual Disease (MRD) by flow cytometry would contain cells with leukemic-initiating-potential that could be identified on genetic (rather than phenotypic) grounds by Whole Exome Sequencing.

  Dataset EGAD00001006585

• WGS from PDAC samples

  Bam files from WGS of PDAC samples used in the PCSI mismatch repair study

  Dataset EGAD00001006262

• MPNST study - scRNA

  10X single nucleus RNA data of one MPNST patient, including one primary and five recurrence regions

  Dataset EGAD50000002565

• MPNST study - WGS data

  WGS data of one MPNST patient, including one primary, five recurrence regions, and blood sample as normal control.

  Dataset EGAD50000002566

• PDiamond Korean Lung Cancer Data

  WES and RNA-seq data of PDiamond Korean lung cancer data

  Dataset EGAD50000000844

• Single-cell transcriptomics of neuroblastoma tumors

  Single-cell, single-nucleus and CITE-sequencing of neuroblastoma tumors with 10X Genomics

  Dataset EGAD50000000328

• germline_2 SNP6.0

  Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array

  Dataset EGAD00010001813

• leukemia_2 SNP6.0

  Over 1.87 million SNP and CNV loci are screened by Affymetrix SNP 6.0 array

  Dataset EGAD00010001814

• Multi-omics RNA profiling of glioblastoma patient tissues

  Multi-omics profiling of paired primary and recurrent glioblastoma patient tissues

  Dataset EGAD00010001895

• WP8_DNA_Methylation_450K_UCL

  BLUEPRINT DNA methylation profiles of monocytes, T cells and B cells in type 1 diabetes-discordant monozygotic twins

  Dataset EGAD00010001025

• dataset1

  Contains control and PXR KD human small intestinal organoids

  Dataset EGAD00001009785

• Whole-genome sequencing of a thyroid carcinoma harboring a ETV6-NTRK3 fusion and a NTRK3 G623R mutation (HIPO-021)

  Dataset EGAD00001006243

• RNAseq

  This dataset contains RNAseq performed on 35 human acute erythroid leukemia patient samples and Xenografts.

  Dataset EGAD00001006076

• Intellectual disability exome sequencing

  Exome sequencing of ID trios and sibpairs

  Dataset EGAD00001005442

• RNA-Seq dataset

  10 RNA-Seq bam files including 4 cases with fusion and 6 controls without fusion.

  Dataset EGAD00001004360

• DIPG_ICR_WES

  Whole exome sequencing of 6 tumour and normal pairs of diffuse intrinsic pontine glioma (DIPG)

  Dataset EGAD00001000706

• Data Access Committee of Biobank Lab, Department of Oncobiology and Epigenetics, University of Lodz

  Dac EGAC50000000080

• DAC Pediatric tumors SJD IRB

  Samples from pediatric tumors from Sant Joan de Déu, sequenced and processed by IRB Barcelona. Contact Information Núria López-Bigas bbglab@irbbarcelona.org

  Dac EGAC50000000118

• Sharma/Busskamp Retinal Organoid

  DAC controlling a transcriptomic data set from retinal organoids generated with 10x chromium data, part of a publication between Sharma and Busskamp (DOI: 10.1016/j.stem.2025.12.013)

  Dac EGAC50000000487

• MPNST study - 10X single nucleus DNA data

  10X single nucleus DNA data of one MPNST patient, including one primary and five recurrence regions

  Dataset EGAD50000002567

• Transcriptomics dataset from human prefrontal cortex tissue - ALS vs CTR

  Fastq files and BAM files

  Dataset EGAD50000000467

• 450K_DKFZ_ACC_CJ

  primary human ACC and normal samples using 450K

  Dataset EGAD00010001298

• CS Baby Biome gut microbiome

  This dataset contains metagenomic sequencing of stool samples of babies from CS Baby Biome project, and their mothers

  Dataset EGAD00001011367

• WGS of IP-DLBCLs

  This data set includes bam files of WGS of 36 paired lymphomas in immune-privileged sites and normal controls.

  Dataset EGAD00001007753

• CSC DDR dataset

  CSC DDR dataset contains 4 bam files of two pairs of colorectal CSCs sensitive and resistant to ATR or CHK1 inhibitor

  Dataset EGAD00001006774

• RNA-sequençing of 21 inflammatory hepatocellular adenomas and 1 non-tumoral sample

  Dataset EGAD00001005284

• Whole genome sequencing data

  Whole genome sequencing reads consisting of paired end Fastq and aligned bam files from pediatric medulloblastoma samples.

  Dataset EGAD00001004115

• Somatic cancer gene mutation screening

  Sequencing of colorectal tumors and normal tissue using Ion AmpliSeq Cancer Hotspot Panel V2

  Dataset EGAD00001001010

• DIPG_ICR_WGS

  Whole genome sequencing of 20 tumour and normal pairs of diffuse intrinsic pontine glioma (DIPG)

  Dataset EGAD00001000705

• WGS from KeyLargo patients

  WGS from KeyLargo from paired tumor (tissue) and normal (blood) samples

  Dataset EGAD50000001744

• RNA-seq data of CRC-PDX tumors

  We obtained bulk RNAseq data of CRC-PDX tumors and performed molecular subtype classification.

  Dataset EGAD50000000850

• Affymetrix_HTA2.0

  Primary renal cell carcinoma (RCC) and RCC metastases by Affymetrix GeneChip HTA 2.0

  Dataset EGAD00010001589

• Gene Expression Profiling

  Gene Expression Profiling from 21 cases: 14 CCND1-negative Mantle Cell Lymphoma and 7 CCND1-positive Mantle Cell Lymphoma

  Dataset EGAD00010001582

• Long-term organoid culture of a small intestinal neuroendocrine tumor

  organoid and tissue bam files from rna-seq experiment

  Dataset EGAD00001010175

• Footprint_batch02

  Intrahepatic cholangiocyte organoid clone from patients with chronic alcohol consumption, NASH (nonalcoholic steatohepatitis), and PSC (primary sclerosing cholangitis)

  Dataset EGAD00001007775

• Esthioneuroblastomas

  This dataset consists on 22 samples linked to 22 bam files from whole genome and whole exome sequencing of Esthioneuroblastomas.

  Dataset EGAD00001004355

• Whole Exome Sequencing of Diffuse Glioma Samples

  This dataset contains FASTQ files obtained through whole exome sequencing of glioma and matched blood samples.

  Dataset EGAD00001004144

• Histone marks

  EZH2, H3K4me3, H3K27ac and H3K27me3 ChIP-seq data consisting of fastq single-end reads from peripheral blood CLL cells

  Dataset EGAD00001004063

• 20180208_EGA_Trench_MetCellLine.1

  Illumina platform sequencing data of SureSelect exome libraries prepared from 3 samples from one donor: a normal, primary breast cancer, and cell line derived from metastasis

  Dataset EGAD00001003956

• Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing

  Dataset EGAD00001000856

• SCCOHT

  Exome sequencing of familial and sporadic small cell cancer of ovary cases.

  Dataset EGAD00001000791

• Genetic drivers of epigenetic and transcriptional variation of human immune responses to infection (WGS and WGBS)

  WGS and WGBS data from monocyte-derived macrophages that were infected with Influenza A virus strain PR8WT, or a matching non-infected control.

  Dataset EGAD00001008359

• MDS PacBio LRTS IsoSeq

  This dataset contains long read transcriptome sequencing of 25 myelodysplastic sndrome (MDS) patients with or without mutation in SF3B1. The BAM files are unaligned CCS reads.

  Dataset EGAD50000000077

• RNA sequencing

  RNAseq of 45 high-grade serous ovarian cancer tumour samples. Libraries were generated using the NEB Ultra II Directional RNA library Prep kit with polyA enrichment. Libraries were sequenced as paired-end 50 or 100bp on an Illumina NextSeq or NovaSeq.

  Dataset EGAD00001009844

• 20191008_EGA_MELA_Acral_WGS+RNASeq

  Illumina platform sequencing of whole genome libraries prepared from paired tumour/normal samples from 87 cases of melanoma Acral subtype. 63 cases also have RNASeq sequencing from the tumour sample.

  Dataset EGAD00001005500

• Use of deep sequencing to detect clonal mutations in sun exposed human epidermis - whole genome

  Deep sequencing of two skin biopsies to study the landscape of somatic mutations in human adult tissues.

  Dataset EGAD00001001123

• Data Access Committee of divisions B060 and B062, German Cancer Research Center (DKFZ)

  Dac EGAC00001000219

• Whole gut virome analysis of 476 Japanese revealed a link between phage and autoimmune disease

  Elucidation of disease state by multi-layered omics analysis

  Study JGAS000415