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• Integrated Genomic, Epigenetic, and Expression Analyses of Ovarian Cancer Cell Lines

  In this dataset there are 55 whole genome sequencing samples of epithelial ovarian carcinoma (bam files).

  Dataset EGAD00001004532

• DNMT3A microcephalic primordial dwarfism RRBS data

  RRBS sequence data from one control and one patient with de novo DNMT3A mutations resulting in microcephalic primordial dwarfism.

  Dataset EGAD00001004472

• Whole-exome sequencing data of Hepato-Cholangiocarcinoma

  Hepatocellular carcinoma specimens, intrahepatic cholangiocarcinoma specimens and liver normal tissues collected from 7 samples, including 44 fastq files from whole exome sequencing.

  Dataset EGAD00001003892

• Chad genetic diversity reveals an African history marked by multiple Holocene Eurasian migrations

  Whole-genome sequencing data from Chad and Lebanon.

  Dataset EGAD00001002742

• Whole-exome and transcriptome in RMS

  Whole-exome sequencing in 16 RMS casesWhole-transcriptome sequencing in 8 RMS cases

  Dataset EGAD00001001105

• Targeted sequencing data on sequential liquid biopsy samples from CSPC patients

  Sequencing data from newly diagnosed high emtastatic burder prostate cancer patients receiving an AR pathway inhibitor (ARPI) or docetaxel. Targeted sequencing data of prostate cancer relevant genes using the PCF-SELECT capture panel. cfDNA from PreADT, baseline, on-treatment (Cycle1 to 6) taken on ARPI or Docetaxel were sequenced as well as patient-matched WBC DNA

  Dataset EGAD50000001960

• Application of Hi-C sequencing to detect structural variants in B-cell acute lymphoblastic leukemia

  Large structural variants are easily detected by Hi-C sequencing as strong, distant signals on a Hi-C contact map. Translocations are frequently evident in B-ALL and accurate identification of these translocations can guide clinical treatment options. Here were apply shallow Hi-C sequencing as an unbiased, cost-effective approach to identify translocations among B-ALL patients.

  Study EGAS00001005605

• Geographic and age-related variations in mutational processes in colorectal cancer - sequence data (Mutographs)

  Geographic and age-related variations in mutational processes in colorectal cancer - sequence data (Mutographs)

  Dataset EGAD00001015485

• Geographic and age-related variations in mutational processes in colorectal cancer - filtered vcf files (Mutographs)

  Geographic and age-related variations in mutational processes in colorectal cancer - filtered vcf files (Mutographs)

  Dataset EGAD00001015486

• Geographic and age-related variations in mutational processes in colorectal cancer - copy number variants (Mutographs)

  Geographic and age-related variations in mutational processes in colorectal cancer - copy number variants (Mutographs)

  Dataset EGAD00001015487

• Organoid Derivation Project - RNAseq (2024-10-14)

  Sequencing of tissue samples and their derived organoids. This dataset contains a subset of colorectal and colorectal liver metastasis samples.

  Dataset EGAD00001015425

• FWO-project G.0687.12_X10-WGS

  Profiling subclonal architecture and phylogeny in tumors by whole-genome sequence data mining and single-cell genome sequencing

  Dataset EGAD00001001429

• Colorectal organoids and tumour tissue

  Whole genome sequencing of single cell derived organoids from normal colon tissue and colorectal cancer.

  Dataset EGAD00001001447

• Comprehansive analysis of somatic mutations and genetic variations with whole genome sequencing

  Indetification of stractural variations by using of long read whole genome sequencing data

  Study JGAS000516

• WM-WES dataset

  We performed whole-exome sequencing on Bone-Marrow and Peripheral Blood samples from WM patients, including 9 patients with sequential samples.

  Dataset EGAD50000001776

• Comparison of good PDX responders and bad PDX responders

  RNA-Seq raw data of untreated breast cancer xenografts known as good or bad acetalax responders.

  Dataset EGAD50000000876

• APCDR AGV Mandinka

  APCDR AGV Project: Array data from 88 Mandinka. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001057

• APCDR AGV Kalenjin

  APCDR AGV Project: Array data from 100 Kalenjin. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001052

• APCDR AGV Wolof

  APCDR AGV Project: Array data from 78 Wolof. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001050

• APCDR AGV Kikuyu

  APCDR AGV Project: Array data from 99 Kikuyu. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001049

• APCDR AGV Jola

  APCDR AGV Project: Array data from 79 Jola. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001048

• APCDR AGV Barundi

  APCDR AGV Project: Array data from 97 Barundi. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001051

• APCDR AGV Sotho

  APCDR AGV Project: Array data from 86 Sotho. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001046

• APCDR AGV Igbo

  APCDR AGV Project: Array data from 99 Igbo. Raw data, intensity files and post-QC Plink files.

  Dataset EGAD00010001045

• HCA Organoids | Colon - Cancer, Multiome Sequencing Data

  Multiome sequencing of patient tissue and patient derived organoids in colon cancer

  Dataset EGAD00001015504

• Metagenome Sequencing Data Cachexia Non-Cachexia

  120 samples of cachectic and non cachectic. 240 Fastq files from Illumina metagenomic shothun paired End Sequencing

  Dataset EGAD00001010279

• MDS MSC

  bam files, mapped to hg19 after dedup, recal, recalibration and clipping of overlapping redas

  Dataset EGAD00001006968

• RNA-Seq of SMARCB1 re-expression and HDAC+mTOR inhibition experiments in malignant rhabdoid tumor organoids

  Dataset EGAD00001006574

• Pharmacogenomics of T-ALL

  Whole exome seq (N=21) and RNA-seq (N=36) data of additional T-ALL

  Dataset EGAD00001006434

• Multiregional non-invasive genetic characterization of MM

  Genomic characterization (through whole-exome sequencing) of circulating tumor cells, bone marrow clonal plasma cells and extramedullary plasmacytomas from multiple myeloma patients.

  Dataset EGAD00001006028

• Whole-genome and transcriptome sequencing of a patient with extrapancreatic acinar cell carcinoma

  Dataset EGAD00001006023

• Whole-genome and transcriptome sequencing data of an undifferentiated gastric spindle cell sarcoma

  Dataset EGAD00001006014

• RNA-seq, WGS and WES of Hepatocellular carcinomas, enriched in fibrolamellar carcinomas

  Dataset EGAD00001005308

• Accelerated clonal evolution in refractory versus relapsed chronic lymphocytic leukemia upon treatment

  Identify and track clonal evolution of clones in consecutive human chronic lymphocytic leukemia samples identified by whole exome sequencing.

  Dataset EGAD00001005058

• BAM files corresponding to PARN mutations identified in Hoyeraal-Hreidarsson syndrome patients

  PARN sequences of Patients 1 and 2 carrying mutatoins as decribed in Benyelles et al., EMBO Molecular Medicine 2019)

  Dataset EGAD00001005125

• Exome sequencing of FFPE sample

  Bam file from exome sequencing of FFPE sample from Ly3 using SeqCap EZ Human Exome Library (Roche Nimblegen, Inc., WI, USA) and Illumina HiSeq2000 sequencer.

  Dataset EGAD00001004782

• GENOMIC INSTABILITY IN MISMATCH REPAIR DEFICIENT COLORECTAL CANCER WES MSI Colorectal Cancer

  This dataset contains Whole Exome Sequencing of 47 MSI colorectal cancers (CRCs) and paired adjacent normal mucosa

  Dataset EGAD00001004550

• Genomic heterogeneity recapitulated in a PDXovo model - WXS mapped reads

  Ultra-Fast Patient-Derived Xenografts Identify Functional and Spatial Tumour Heterogeneities that Drive Therapeutic Resistance - WXS mapped reads

  Dataset EGAD00001003589

• Exome sequencing reads

  Exome sequencing reads of two UFM individuals and their family members (totally 11 individuals) belonging to two different Fragile X families. Alignment files in BAM format are provided.

  Dataset EGAD00001002276

• Cell lines with telomere fusion-induced rearrangements

  Whole-genome somatic rearrangement and point mutation analysis in cell lines with induced telomere fusions.

  Dataset EGAD00001001629

• ICGC Korean Breast Cancer Project

  A comprehensive characterisation and analysis of human breast cancers through whole-genome sequencing.

  Dataset EGAD00001001322

• HiSeqXTen sequencing of tumour-normal sample pairs from three mesothelioma patients

  Aligned, merged and deduplicated BAM files from HiSeqXTen sequencing of six samples: matched tumour-normal pairs from three melanoma patients.

  Dataset EGAD00001003222

• Sequencing .bam files

  Sequencing of untreated pancreatic cancer metastases and primary tumor sections.

  Dataset EGAD00001003153

• Kidney Cancer Heterogeneity and Evolution Revealed by Multi-Region Exome Sequencing

  Paired end Illumina sequencing of whole exomes of multiple tumour regions.

  Dataset EGAD00001000734

• CAfGEN2 Phenotype dataset

  CAfGEN2 phenotype data from 97 samples Uganda, Botswana and Eswatini.

  Dataset EGAD00001015820

• Covid19 WGS variants analysis

  483 samples were collected for WGS and aligned with GRCh38 human genome. The variants were called using GATK (Sentieon v. 201808.03) in GVCF and VCF format.

  Dataset EGAD00001010138

• RNA Seq of 25 spheres derived from lymph nodes of lung cancer patients

  To further decipher the cell type composition within single spheres we performed RNA-Seq of 25 selected spheres of 4 different categories (including 8 signature-/balanced, 9 signature+/balanced, 1 signature-/aberrant, 7 signature+/aberrant). Samples were sequenced using Illumina NextSeq 2000.Fastq reads were processed using inhouse RNA-Seq workflow.

  Dataset EGAD00001011099

• Paired-end RNA-seq analysis of the 3D evolution of glioma cell populations. Part 2.

  Dataset contains paired-end RNA-seq sequencing data from 221 glioma samples.

  Dataset EGAD00001009497

• Pre-post neoadjuvant chemotherapy breast cancer dataset- RNAseq data

  This dataset contains RNAseq data of 20 paired pre-post neoadjuvant chemotherapy breast cancer samples. In total the set contains n=20 biopsies, n=20 surgery specimens. Each sample has 2 fastq files, so n=80 fastq files are uploaded in total.

  Dataset EGAD00001008421

• SARS-CoV2 nasal epithelium

  Single cell RNA sequence generated from human primary nasal epithelium differentiated at air-liquid interface. This dataset comprises tissue from two donors, with cultures either unexposed or exposed to SARS-CoV2. Libraries were prepared using the 10X Genomics pipeline as per manufacturer's instructions.

  Dataset EGAD00001008159