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• High throughput profiling of undifferentiated pleomorphic sarcomas identifies two main subgroups with distinct immune contexture, clinical outcome and sensitivity to targeted therapies

  Study EGAS00001004612

• Mutation and Microsatellite Burden Predict Response to PD-1 Inhibition in Children with Germline DNA Replication Repair Deficiency: An Observational Registry Study

  Study EGAS00001005579

• DNA_Methylation_450K

  BLUEPRINT DNA methylation profiles of monocytes, neutrophils and T cells from healthy donors

  Dataset EGAD00010000850

• RNA-Sequencing generated from 180 human putamen and substantia nigra

  Dataset EGAD00001005526

• RNA-seq data from diagnosis and relapse samples of Down Syndrome acute lymphoblastic leukemia.

  Dataset EGAD00001003280

• Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets

  Dataset EGAD00001001096

• Comprehensive Characterization of Early Relapse and End-Stage Relapsed Refractory Multiple Myeloma (HIPO K08K/H067/H021+nonHIPO)

  Study EGAS00001007469

• ORIENT study

  scRNAseq dataset containing 5 healthy donors and 4 asthmatic donors.

  Dataset EGAD00001009687

• whole genome sequence of liver cancer

  There are six samples with three blood samples and three organids

  Dataset EGAD00001009841

• Disorders of growth and insulin action

  Illumina paired-end sequencing of whole- exome pulldown DNA from Severe Insulin Resistant patients.

  Dataset EGAD00001000381

• Osteosarcoma exome sequencing dataset

  Whole exome sequencing data of primary, secondary and tertiary tumor from a patient.

  Dataset EGAD00001002145

• RNA-seq analysis of BMP-stimulated glioma initiating cells

  Bone morphogenetic protein (BMP) signaling has been shown to suppress progression of glioblastoma by promoting astrocytic differentiation; however, roles of BMP signaling in cell proliferation and apoptosis of glioblastoma cells remains to be elucidated. We here performed RNA-seq analysis of glioma initiating cells to identify transcriptional target(s) of BMP.

  Study JGAS000077

• Chondrosarcoma_Targeted_Sequencing_Study

  This Study uses a focused bait pull down library method to target findings of Chondrosarcoma whole genome and whole exome sequencing studies in order to validate findings. This method will also be used on a larger set of tumour only samples in order to find precedence of these finding in a larger set of patients.

  Study EGAS00001000277

• Transcriptome sequencing of hepatocellular carcinoma biopsies (TACE study)

  Illumina-based RNA-Seq analysis of 93 liver samples. Biopsies of tumors and non-tumor tissues are included. Samples are stratified by response and non-response to TACE treatment.

  Dataset EGAD00001008158

• Multifocal Breast Project

  Comparison of genomic rearrangements and DNA methylation patterns between different foci of multiple synchronous (multifocal and multicentric) invasive breast cancers.

  Dataset EGAD00001001041

• WGS of multi-centric liver cancers and intra-haptatic metastasis of liver cancer.

  RIKEN collection of WGS read of 59 multi-centric liver cancers or intra-haptatic metastasis and matched blood samples from 19 donors.

  Dataset EGAD00001001643

• WES of blood and patient-matched cecum tumor tissue samples, Panel NGS of patient-matched cfDNA

  WES using IDT xGen Research Exome on Illumina NovaSeq 2x150bp: Normal sample (buffy coat), cecum tumor biopsy at diagnosis, ileocecal valve region tumor sample at week 19, pericolonic metastasis at week 19, lymph node metastasis at week 19, peritoneal metastasis at week 19. Week 19 samples from hemicolectomy. Deep coverage cfDNA NGS using PanCeq pan-cancer panel on NextSeq 2x150bp: week 2 and week 10.

  Dataset EGAD00001005737

• Baulac Lab - Paris Brain Institute

  Raw 10X single-nucleus RNA-seq data from human postoperative brain samples of patients with epilepsy and cortical malformations.

  Dac EGAC50000000546

• Single cell sequencing reveals expanded cytotoxic CD4+ T cells and two clusters of peripheral helper T cells in synovial fluid of ACPA+ RA patients

  Study EGAS00001005241

• ILC RNAseq dataset

  RNAseq data from ILC (n=168) and IC-NST/IDC (n=79)

  Dataset EGAD50000002527

• CRISPR_perturbations_IRF4_PRDM1_Bcells

  CRISPR perturbations of IRF4, PRDM1, and AAVS1 (within PPP1R12C gene) in activated B cells

  Dataset EGAD50000002113

• DLBCL cfDNA seq

  Sequencing dataset of 290 DLBCL and HGBL cfDNA samples of paired end 150bp sequencing runs.

  Dataset EGAD50000000602

• Whole-exome sequencing of buccal mucosa samples

  40 buccal mucosa samples and a paired blood sample were whole-exome sequenced.

  Dataset EGAD50000000080

• miRNA profiling of human plucked hair follicle

  miRNA profiling of human plucked hair follicle from frontal and occipital scalp

  Dataset EGAD00010001500

• EGAD00010000450

  Genome Wide Genotype Data

  Dataset EGAD00010000450

• Medulloblastoma Illumina RNA-Seq

  Illumina RNA-sequencing of Medulloblastoma primary and relapse tumor.

  Dataset EGAD00001009425

• Medulloblastoma Illumina WGS

  Illumina whole genome sequencing of Medulloblastoma Blood, Primary tumor, and Relapse tumor

  Dataset EGAD00001009424

• Second generation noninvasive fetal genome analysis reveals de novo mutations, single-base parental inheritance, and preferred DNA ends

  Dataset EGAD00001003778

• Transcriptomic profiling of lymphedema

  RNA-seq of skin from human subjects with and without lymphedema

  Dataset EGAD00001006246

• Exome Sequencing of Gastric Cancer Samples

  We perform whole exome sequencing on 50 pairs of gastric cancer and matched normal samples.

  Dataset EGAD00001006957

• High-grade meningioma sequencing data

  Whole genome, whole exome, and custom panel sequencing of high-grade meningioma cohort

  Dataset EGAD00001003220

• Whole Genome Sequencing of acral melanoma

  Whole Genome Sequencing of 5 acral melanomas and matched normal samples

  Dataset EGAD00001000944

• Targeted sequencing data on sequential liquid biopsy samples from CSPC patients

  Sequencing data from newly diagnosed high emtastatic burder prostate cancer patients receiving an AR pathway inhibitor (ARPI) or docetaxel. Targeted sequencing data of prostate cancer relevant genes using the PCF-SELECT capture panel. cfDNA from PreADT, baseline, on-treatment (Cycle1 to 6) taken on ARPI or Docetaxel were sequenced as well as patient-matched WBC DNA

  Dataset EGAD50000001960

• Hospitalised COVID-19 patients: transcriptomic data (longitudinal design- 3 timepoints)

  Hospitalised COVID-19 patients (n=81), cohort from Latvia, 224 transcriptome samples. Longitudinal sampling: A- acute phase, B- 1-month post-hospitalisation, C- 3-4 months post-hospitalization All patients(n=81) were unvaccinated during the study period, Male (n=35), Female (n=46), average age ~57

  Dataset EGAD50000002067

• 20191008_EGA_MELA_Acral_WGS+RNASeq

  Illumina platform sequencing of whole genome libraries prepared from paired tumour/normal samples from 87 cases of melanoma Acral subtype. 63 cases also have RNASeq sequencing from the tumour sample.

  Dataset EGAD00001005500

• JKLab, SNU College of Medicine

  JKLab, Lab of Cellular Translational Medicine, Department of Anatomy and Cell Biology, Seoul National University College of medicine.

  Dac EGAC50000000288

• Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment

  Study EGAS00001003886

• MPNST study - LCM WGS data

  LCM WGS data from one MPNST patient, including one primary and five recurrence regions

  Dataset EGAD50000002568

• Methylation_PBL_UC_Tofacitinib

  Longitudinal whole-genome DNA methylation profiling of PBL obtained from UC patients categorized as responders and non-responders

  Dataset EGAD00010002590

• Groupe_case

  Illumina EPIC arrays of human osteoblastomas and their mimics

  Dataset EGAD00010002279

• Whole transcriptome and 850k methylome profiling of human MBM

  Assessment of methylation status of ~850,000 sites

  Dataset EGAD00010002281

• Methylation_monocytes_female_CD

  Whole-genome DNA methylation profiling of CD14+ monocytes obtained from CD-active, CD-remissive and non-CD individuals

  Dataset EGAD00010001846

• Illumina_450K

  Primary renal cell carcinoma (RCC), RCC metastases and cell lines by Illumina 450K

  Dataset EGAD00010001001

• 450K_DKFZ_CLL_NB

  CLL and normal B cell samples using 450K

  Dataset EGAD00010000871

• TCR β-chain repertoire characterization of regulatory and conventional T cells in breast tumors from breast cancer patients.

  Dataset EGAD00001006428

• RCRF release 1

  exome data from leiomyosarcoma, large cell neuroendocrine carcinoma, and clear cell sarcoma

  Dataset EGAD00001010197

• IBC Whole exome sequencing

  Bam files of IBC whole exome sequencing, including tumor and matching normal

  Dataset EGAD00001011648

• 20180221_EGA_OESO

  Illumina platform sequencing of whole genome libraries prepared from normal, Barrett's oesophagus and oesophageal cancer samples from 44 donors

  Dataset EGAD00001003996

• Dataset of PPB

  Whole exome sequencing and miRNA-seq data of PPB.

  Dataset EGAD00001000822

• Maastricht Irritable Bowel Syndrome metagenomic sequencing

  Metagenomic shotgun sequencing of Irritable bowel syndrome patients and matched controls

  Dataset EGAD00001002668