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• DNA methylation

  CASE AND CONTROL SAMPLES USING Infinium MethylationEPIC

  Dataset EGAD00010001805

• anonymized_capTCRseq

  TCR-beta sequences, frequencies, and VDJ usage.

  Dataset EGAD00001008791

• Analysis scripts

  Analysis scripts and output

  Dataset EGAD00001003282

• Department of Pathology and Tumor Biology, Kyoto University Data Access Committee

  Dac EGAC00001000273

• small RNA-Seq and RNA-Seq of cortical tubers from sufferers of tuberous sclerosis complex

  Dac EGAC00001000672

• RNA sequencing data of 66 matched primary and recurrent high grade serous ovarian cancer

  Dac EGAC00001000741

• Naive B-cell receptor heavy chain repertoire of celiac patients and healthy controls - DAC

  Dac EGAC00001001072

• Human T-bet governs innate and innate-like adaptive IFN-g immunity against mycobacteria

  Dac EGAC00001001822

• PELICAN45 and GP21 prostate cancer studies Data Access Committee

  Dac EGAC00001001309

• Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals

  Dac EGAC50000000123

• Volkov Data Access Committee

  Sequencing and analysis data supporting published work of Hadas Volkov

  Dac EGAC50000000907

• Platelets sequester extracellular DNA, capturing tumour-derived and free fetal DNA

  Study EGAS00001006854

• Single-cell sequencing of adipose-derived mesenchymal stromal cells and dermal fibroblasts

  Study EGAS00001006954

• Whole-genome and transcriptome sequencing of blastic plasmacytoid dendritic cell neoplasm

  Study EGAS00001003660

• Integrative pan-cancer genomic and transcriptomic analyses of refractory metastatic cancer

  Study EGAS00001006648

• Epigenome-wide association study of asthma remission in whole blood and nasal epithelium

  Study EGAS00001004766

• Detailed molecular and immune marker profiling of archival prostate cancer samples

  Study EGAS00001004396

• Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls

  Study EGAS00001005069

• Methylation clocks - individual colon, small intestine and endometrial crypts

  Study EGAS00001005514

• Dataset with genome-wide array data from 64 Tunisian and 45 Moroccan individuals.

  Study EGAS00001006427

• Follicular Lymphoma Whole Genome and Transcriptome Sequencing

  Study EGAS00001006646

• WGS of KCNQ2 R201C patient derived iPSC and its isogenic line

  Study EGAS00001007231

• PTPN22 LOTx dataset

  Genotype of PTPN22 SNPs in LOTx donors and recipients

  Dataset EGAD00010001645

• PDX-OmniExpress24

  Primary and PDX SqCC samples using Infinium OmniExpress-24

  Dataset EGAD00010001228

• EGAD00000000029

  Aggregate results from a case-control study on stroke and ischemic stroke.

  Dataset EGAD00000000029

• 20200819_EGA_Qld_Melanoma.radiomics

  A radiomics study integrating PET/CT, WES and RNAseq data

  Dataset EGAD00001006375

• Clonal Driver Neoantigen Loss under EGFR TKI and Immune Selection Pressures

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  Study EGAS00001007926

• Genome-wide methylation detection and episignature analysis using PacBio long-read sequencing

  Study EGAS00001008250

• Department of Pathology and Tumor Biology, Kyoto University Data Access Committee

  Dac EGAC00001000150

• Genetics and transcriptomes of pediatric B cell precursor leukemia with gain of chromosome 21

  Dac EGAC00001001348

• Swarm Learning to identify COVID-19, tuberculosis and leukemia patients based on blood transcriptomes

  Dac EGAC00001001639

• Immune infiltrate and tumor microenvironment transcriptional programs stratify pediatric osteosarcoma into prognostic groups at diagnosis

  Dac EGAC00001002133

• Extreme intratumor heterogeneity and driver evolution in mismatch repair deficient gastro-esophageal cancer

  Study EGAS00001003434

• Biological and Therapeutic Implications of a Unique Subtype of NPM1 Mutated AML

  Study EGAS00001004872

• Inherited CD28 deficiency in otherwise healthy patients with disseminated warts and giant horns

  Study EGAS00001004837

• Microbiome confounders and quantitative profiling challenge established microbial targets in colorectal cancer developmental stages

  Study EGAS00001007413

• WGS of iPSC from TOF patients with/without DG and healthy control

  Study EGAS00001006035

• Induction Failure in Childhood and Young Adult T-cell Acute Lymphoblastic Leukemia

  Study EGAS00001006411

• Whole exome and whole genome sequencing of juvenile myelomonocytic leukemia (JMML)

  Dataset EGAD00001000427

• Sample sheet

  Linking anonymized sample IDs and anonymized patient IDs.

  Dataset EGAD00001011166

• Hi-C analysis of patient-derived pancreas neoplasm organoids

  Pancreatic cancers arise from two different precursors; intraductal papillary mucinous neoplasms (IPMN) and pancreatic intraepithelial neoplasm (PanIN), while biological differences in cancers originated from thme remain obscure. Here, we analyzed their three-dimensional genome structure by Hi-C using patient-derived organoids.

  Study JGAS000262

• Extrachromosomal DNA-driven oncogene dosage heterogeneity determines therapy response in neuroblastoma

  Characterization of ecDNA copy number-dependent plasticity of neuroblastoma patient-derived xenograft models. Data corresponds to single-cell G&T sequencing from an untreated neuroblastoma PDX and single-cell multiome ATAC + gene expression sequencing of a SHH medulloblastoma tumor.

  Study EGAS50000001040

• Single cell RNA-seq profiling of CD8 T cells from elder adults

  Single cell RNA-seq profiling of ~62k purified CD8+ T cell transcriptomes, from six healthy older adult donors using 10X genomics. Cells from each donor were separated based on their IL-7R protein expression (i.e. CD8+ IL7R+ and CD8+ IL7R- T cells).

  Study EGAS00001004255

• Placental multi-omics data-mining in Intra-Uterine Growth Restriction

  Methylomics and transcriptomics array-based analysis of 36 placentas: 28 with IUGR (Intra-Uterine Growth Restriction) vs. 8 control pregnancies. Methylomics data were obtained using Illumina HumanMethylation-450k microarrays. Transcriptomics data were obtained using Illumina HumanHT-12 v4 Expression BeadChips.

  Study EGAS00001003467

• UCL COVID-19 Single-cell PBMC

  Single-cell multi-omic profiling of COVID19 patients recruited from University College London. Data represent RNA-seq, surface protein measurements (CITE-seq) of 192 antibody targets, along with VDJ-seq profiling of single T cell and B cell receptors. Samples are pooled, with 4 donors per pool. Germ-line genotypes derived from previous single-cell RNA-sequencing are provided (VCF) to aid demultiplexing of single-cell and assignment to specific patient donor samples.

  Dataset EGAD00001007865

• Whole exome sequencing of primary mediastinal large B-cell lymphoma

  This dataset contains raw .fastq files of a whole exome sequencing experiment on primary mediastinal large B-cell lymphoma and contains 8 tumor-normal pairs and 14 unpaired tumor samples.

  Dataset EGAD00001008744

• Transcriptomic data in 46,XX, 46,XY, 47,XXY, 47,XYY individuals

  This dataset contains paired-end (151x2) RNA sequencing data (fastq files) from 25 human blood samples, some with sex chromosome aneuploidies. Data were generated using Illumina technology (Novaseq 6000) and a median of approximately 174 million pairs of reads per sample were obtained using two sequencing batchs. Samples come from: six 46,XX individuals, six 46,XY individuals, nine 47,XXY individuals, and four 47,XYY individuals.

  Dataset EGAD00001011202

• Organoid Derivation Project WGS: Release 2

  Sequencing of tissue samples and their derived organoids from oesophageal, pancreatic and colorectal cancer patients.

  Dataset EGAD00001005955

• Organoid Derivation Project TGS: Release 3

  Sequencing of tissue samples and their derived organoids from oesophageal, pancreatic and colorectal cancer patients.

  Dataset EGAD00001005958

• RNAseq FASTqs

  RNAseq FASTq files from 817 bulk pre-treatment tumors from three indications (mUC, NSCLC and RCC) across three phase II (IMvigor210, POPLAR, IMmotion150) and a phase I (PCD4989g) clinical trials.

  Dataset EGAD00001006631