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• Covacta OLINK NPX

  Olink Explore 1536 dataset from serum of patients enrolled in the COVACTA trial. This dataset includes the NPX values provided by Olink.

  Dataset EGAD00001011169

• Whole exome sequencing and RNA-seq of esophageal squamous cell carcinoma

  We perform integrative genome-wide analyses such as whole-exome sequencing, copy number variant(CNV) analysis, and gene expression analysis using next-generation sequencing and other methods to elucidate driver genes and signaling pathways causing tumorigenesis and cancer progression, leading novel molecular diagnostics and molecular therapies.

  Study JGAS000367

• Exome sequencing identifies mutation of the ribosome in T-cell acute lymphoblastic leukemia

  Exome sequencing identifies mutation of the ribosome in T-cell acute lymphoblastic leukemia

  Dataset EGAD00001000291

• Whole_Exome_Sequencing_of_INTERVAL

  Whole exome sequencing of a subset of participants from the INTERVAL study.

  Study EGAS00001000825

• Brain_Disease_Wellcome_Leap_Delta_Tissue_RNA

  Utilising Single-Nucleus sequencing to investigate how the tumour microenvironment regulates glioblastoma cell states.

  Study EGAS00001005800

• Exome sequences of three individuals from the EXCEED study

  Exome sequences of three unrelated individuals of south Asian ancestry from the EXCEED study

  Dataset EGAD00001007649

• The study provides comprehensive access to the set of EGA studies which may be useful as controls.

  The subjects studies in these datasets were selected due to being healthy control individuals or otherwise provide well characterised phenotype or exclude certain disease phenotype categories such that they may be useful as control population, such as to derive allele frequencies from a known reference population.

  Study EGAS00001000646

• Genomic and transcriptomic profiling of combined hepatocellular and intrahepatic cholangiocarcinoma reveals distinct molecular subtypes

  We performed genomic and transcriptomic sequencing of 133 combined hepatocellular and intrahepatic cholangiocarcinoma (cHCC-ICC) cases, including separate, combined, and mixed subtypes.

  Study EGAS00001003093

• Family Genomics of Bipolar Disorder

  This study examined the segregation of variants with phenotype in pedigrees harboring bipolar disorder.

  Study phs000866

• Juvenile Idiopathic Arthritis exome sequencing in a consanguineous family

  Identify the causative gene defect in three affected patients with JIA.

  Study EGAS00001003510

• SCC tumor sequencing

  In this study we have sequenced the tumor of 28 Squamous Cell Carcinoma patients.

  Study EGAS00001003988

• He et al. WGS data

  This dataset are the bam files of WGS data from the paper by He et al.

  Dataset EGAD00001007133

• Finnish - THL Health2000 Dataset

  The dataset encompasses 208 Runs from the WGSPD Project 3 - Genomic Strategies to Identify High-impact Psychiatric Risk Variants Project

  Dataset EGAD00001008684

• DNA methylation changes associated with hyperglycemia in type 1 diabetes

  This dataset includes DNA methylation profiles from 112 young with Type 1 Diabetes (T1D) at T1D diagnosis, who were longitudinally monitored for hyperglycemia over an average duration of 3 years. These datasets were generated using whole-genome bisulfite sequencing. It includes 1872 fastq files (i.e. 936 paired-end fastq files) generated through 150 bp paired-end sequencing on Illumina HiSeqX.

  Dac EGAC50000000237

• Transcriptomics for UPST-SCCHN3 cohort

  Transcriptomics of Tumor samples on UPST-SCCHN3 cohort

  Dataset EGAD50000002179

• Metadata associated with sequencing

  Associated metadata for sequencing data.

  Dataset EGAD50000000528

• FASTQ NGS dataset for EGAS00001001632:New Brain Tumor Entities Emerge from Molecular Classification of CNS-PNETs

  Dataset EGAD00001001927

• Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - TLR_pathway_study

  upcoming publication

  Dataset EGAD00001001960

• High coverage Whole exome DNA sequencing on pre-treatment tumor samples (n=3) matched with post-treatment metastasized lymph nodes isolated with laser microdissection (n=3)

  Data from NABUCCO cohort 1 (NCT03387761). This dataset includes High coverage Whole exome DNA sequencing on pre-treatment bladder tumor samples (n=3) matched with post-treatment metastasised adjacent lymph nodes isolated with laser microdissection (n=3) for 3 unique patients

  Dataset EGAD00001006852

• McGill EMC Community projects Release 7 for cell line "SaOS-2"

  Complete reference epigenome (as defined by IHEC) of a SaOS-2 cell line with osteosarcoma.

  Dataset EGAD00001007678

• Discovery of resistance mechanisms to the BRAF inhibitor vemurafenib in metastatic BRAF mutant melanoma

  Discovery of resistance mechanisms to the BRAF inhibitor vemurafenib in metastatic BRAF mutant melanoma by massively-parallel sequencing of tumour samples. Comparison of genomic characteristics of pretreatment 'sensitive' to recurrence 'resistant' tumours to identify the genetics of drug resistance.

  Dataset EGAD00001000707

• Genomic profiling of two pathogenic germline truncating variants of BRCA2 confer different haploinsufficiency phenotype

  Observation of the loss of heterozygosity of BRCA2

  Study EGAS50000000613

• Haemoglobin_E_beta_thalassaemia_in_a_patient_group_from_Sri_Lanka

  Exome sequencing of 32 patient samples from Sri Lanka with the condition haemoglobin E beta thalassaemia

  Study EGAS00001000626

• BAM files ChIP-Seq

  Data from the paper Context-specific Effects of TGFβ/SMAD3 in Cancer Are Modulated by the Epigenome. Tufegdzic et al, Cell Reports 2015

  Dataset EGAD00001001669

• Genetic and methylation profiles distinguish benign, malignant and spitzoid melanocytic tumors

  Genetic and methylation profiles distinguish benign, malignant and spitzoid melanocytic tumors

  Study EGAS00001006205