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• Whole exome sequencing of HCCs in children with bile salt export pump deficiency

  Whole exome sequencing of 6 HCCs and matched background liver in children with bile salt export pump deficiency.

  Dataset EGAD00001000811

• Transcriptome and epigenome characterization of BMP signaling effects on H3.3K27M DIPG

  We profiled transcriptome and epigenome of BMP signaling effects on H3.3K27M DIPG.

  Dataset EGAD00001007768

• WGS of multi-centric liver cancers and intra-haptatic metastasis of liver cancer.

  RIKEN collection of WGS read of 59 multi-centric liver cancers or intra-haptatic metastasis and matched blood samples from 19 donors.

  Dataset EGAD00001001643

• Whole genome sequencing of breast cancer and related clones

  Paired WGA (whole-genome amplificated) samples from 65 single cell-derived organoids and six fresh single cell-derived organoid samples both of which were established from normal mammary epithelial cells, 84 FFPE LCM (laser-capture microdissection) samples of breast cancer and related clones, 79 fresh-frozen LCM samples of non-cancer lobules of breast cancer patients, and 36 matched germline controls were subjected to whole genome sequencing using NovaSeq 6000 system (Illumina) or DNBSEQ-G400RS (MGI Tech).

  Dataset EGAD00001010833

• Human Heredity and Health in Africa Data Access Committee

  Dac EGAC00001000648

• Heritable pulmonary arterial hypertension - new genetic findings and environmental triggers

  This dataset contains whole exome sequencing data of 13 family members of 5 heritable pulmonary arterial hypertension families.

  Dataset EGAD50000001817

• WGBS of stepwise-edited melanoma model

  This dataset contains WGBS of a stepwise-edited, human melanoma model including in vitro samples and corresponding xenografts.

  Dataset EGAD50000001317

• WGS of primary mediastinal large B-cell lymphoma

  This dataset includes 19 bamfiles of tumor, relapsed tumor and normal samples derived from 7 patients.

  Dataset EGAD50000000494

• Nanopore sequencing of brain tumor tissue obtained by cavitating ultrasonic aspiration

  This dataset contains 21 pediatric brain tumor cases which where obtained during surgery using a cavitating ultrasonic aspiration and submitted to nanopore whole genome sequencing.

  Dataset EGAD50000000269

• Molecular mechanism of Vd2 T cells upon mevalonate metabolism inhibition

  Raw molecular data of Vd2 T cells upon treatment with different stimuli and mevalonate pathway inhibitors.

  Dataset EGAD00001011322

• TDB-mediated activation of NK cells

  transcriptome analysis of NK cells sorted from PBMCs at baseline and after addition of a CD20 (B cell)-targeted T cell dependent bispecific antibody (TDB)

  Dataset EGAD00001010895

• RNAseq following stent placement and removal in a porcine model 

  This dataset includes 2*76bp RNA-seq reads from 9 pigs sequenced using Illumina NextSeq500.

  Dataset EGAD00001009783

• Patient WGS

  5 samples as fastq file pairs. 1 solid tumour sample from patient #1105 with matched blood, and 2 solid tumour samples from patient #1177 with matched blood.

  Dataset EGAD00001009660

• MTM-HD - skeletal muscle RNAseq

  MTM-HD - skeletal muscle RNAseq. 57 samples from controls, pre-HD and early-HD patients.

  Dataset EGAD00001009106

• Analysis of transcriptomic data

  Thirty six samples were sequenced and analysed.

  Dataset EGAD00001008864

• Whole Exome Sequencing of Localized Prostate Cancer Patients

  Whole exome sequencing of localized prostate cancer patients in this study contained pair tumor-normal samples and validated tumor content.

  Dataset EGAD00001008274

• Bulk tumor RNAseq of bladder cancer patients

  RNAseq fastq files from 611 bulk pre-treatment tumors from two indications: metastatic urothelial bladder cancer patients (IMvigor210) and metastatic renal cell carcinoma (IMmotion150)

  Dataset EGAD00001006960

• Whole-genome and transcriptome sequencing of seven patients with gene therapy-induced T-cell acute lymphoblastic leukemia

  Dataset EGAD00001006016

• HGS-3 - nanopore

  WGS Nanopore nanopore sequencing of organoid line HGS-3.1 and matching blood reference HGS-3

  Dataset EGAD00001005476

• Dataset WES of RRMM patients

  Dataset consists of forty vcf files, outcome of variant calling with caveman algorithm of matched bam file (TUMOR and NORMAL) of RRMM patients. Bam files were obtained from whole exome sequencing!

  Dataset EGAD00001005098

• Pancreatic/Colorectal organoid study control samples

  This dataset contains 53 blood samples used as controls in study EGAXXXXX and EGAXXXXX

  Dataset EGAD00001004529

• Bulk exome sequencing of primary GBM - SF 10282

  We performed bulk exome-seq on a primary GBM and a blood sample from SF10282

  Dataset EGAD00001002275

• Bulk exome sequencing of primary GBM - SF 10345

  We performed bulk exome-seq on a primary GBM and a blood sample from SF10345

  Dataset EGAD00001002273

• Mammary cell samples from donors 28/32/33

  Mammary cell samples from donors 28/32/33. Contains 12 MiSeq sequencefiles and 12 alignment files derived from HiSeq runs.

  Dataset EGAD00001001439

• IVF MeDIP-seq bam files

  Bam files consisting of aligned MeDIP-seq reads from cord blood cells and cord blood mononuclear cells of twins conceived through in vitro fertilisation

  Dataset EGAD00001003158