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• H3Africa SIREN Phenotype

  Phenotype data for 3421 Samples from Nigeria and Ghana, sequenced with the Illumina NestSeq 500.

  Dataset EGAD00001011075

• V2 Colorectal panel test

  Targeted gene screen of cell line tumour samples for testing the new V2 Colorectal gene panel.

  Dataset EGAD00001003253

• ATAC-seq for placental and buffycoat cells.

  We performed ATAC-seq experiments using 2 placental samples and 2 buffycoat samples.

  Dataset EGAD00001004291

• ChIP-Seq files for RMS.

  ChIP-Seq files accompanying the paper titled "Identification of Therapeutic Targets in Rhabdomyosarcoma Through Integrated Genomic, Epigenomic, and Proteomic Analyses".

  Dataset EGAD00001004312

• Amplicon sequencing data from organoids of colorectal cancer patients.

  The dataset includes 13 bam files. Each bam file is a different colorectal cancer patient organoid.

  Dataset EGAD00001004313

• Pilocytic Astrocytoma ICGC PedBrain whole genome sequencing

  Pilocytic Astrocytoma ICGC PedBrain whole genome sequencing

  Dataset EGAD00001000616

• SeqControl

  SeqControl

  Dataset EGAD00001001115

• Belgian epilepsy control individuals

  Genomic DNA from Belgian control individuals was pooled. Then the genomic sequence of brain expressed miRNA genes was determined in the pools.

  Dataset EGAD00001001852

• HipSci - Healthy Normals - Exome Sequencing - January 2016

  HipSci - Healthy Normals - Exome Sequencing - January 2016

  Dataset EGAD00001001932

• NSCCG CRC WES

  1006 Familial early onset gemrline CRC patients sequenced by the Molecular and Population Genetics group of the Institute of Cancer Research

  Dataset EGAD00001002204

• BAP1 sequence of uveal melanoma and mesothelioma samples

  Detection of BAP1 mutations in DNA from uveal melanoma and mesothelioma samples.

  Dataset EGAD00001002229

• Cryptic translocations in double hit signature DLBCL genomes

  18 DLBCL genomes

  Dataset EGAD00001006087

• WES of pcALCL

  Whole-exome sequencing of matched frozen tumor biopsies/granulocytes from patients with primary cutaneous anaplastic large cell lymphoma. 7 paired tumor/germline samples. BGISEQ-500.

  Dataset EGAD00001006177

• EORTC RP1335 SPECTA Lung cancer data - Oncomine

  EORTC RP1335 SPECTA Lung cancer data - Oncomine dataset

  Dataset EGAD00001006594

• WGS of Glioblastoma stem cells (Sachamitr et al)

  WGS of 17 GSC populations derived from patient tumours

  Dataset EGAD00001006848

• Whole Exome Sequencing Fastq PE Files

  Anal SCC cell line and parent tumour comparative whole exome sequencing

  Dataset EGAD00001007001

• Reference epigenome Islet-derived-MSC03 WGBS data generated from KEP study

  Islet-derived-MSC03 WGBS paired end data

  Dataset EGAD00001007142

• Reference epigenome ADMSC05 h3k27me3 ChIP-Seq data generated from KEP study

  ADMSC05 h3k27me3 ChIP-Seq paired end data

  Dataset EGAD00001007375

• KiCS cancer panel academic only data

  This data set contains KiCS cancer panel data for academic and for-profit use.

  Dataset EGAD00001009733

• Targeted capture ctDNA Library CRCQV42Run025-10

  Targeted capture ctDNA Library CRCQV42Run025-10 from patient PBC0001335, TNBC FFPE sample

  Dataset EGAD00001010476

• Optimizing single-cell transcriptomic discrimination of atopic dermatitis versus psoriasis vulgaris

  Optimizing single-cell transcriptomic discrimination of atopic dermatitis versus psoriasis vulgaris

  Dataset EGAD00001011104

• SFHS pedigrees_X10

  Deep (>25x mean coverage) whole genome sequencing on 5-10 families drawn from the Scottish Family Health Study with four or more children.

  Dataset EGAD00001003211

• Multiple_myeloma_precursor_genomics

  Whole genome sequencing of up to 45 multiple myeloma precursor samples and matched normals pairs.

  Study EGAS00001006312

• Juvenile Idiopathic Arthritis exome sequencing in a consanguineous family

  Identify the causative gene defect in three affected patients with JIA.

  Study EGAS00001003510

• BLUEPRINT Bisulfite-seq and Whole Genome Sequencing of mantle cell lymphoma

  Bisulfite-seq and Whole Genome Sequencing of mantle cell lymphoma

  Study EGAS00001001638

• Colorectal_organoids_and_tumour_tissue___Whole_Genome_X10

  Whole genome sequencing of single cell derived organoids from normal colon tissue and colorectal cancer.

  Study EGAS00001001100

• V4_Colorectal_panel_test

  Targeted gene screen of cell line tumours for testing the new V4 Colorectal gene panel.

  Study EGAS00001001807

• Mutational_signatures_and_clonal_dynamics_in_normal_human_tissues

  Somatic mutations (burdens and signatures) and clonal dynamics in normal human tissues

  Study EGAS00001002471

• SCC tumor sequencing

  In this study we have sequenced the tumor of 28 Squamous Cell Carcinoma patients.

  Study EGAS00001003988

• Res1_PC9_exp1_MC_29.03.22

  8 cell pellet samples for genomic DNA extraction. CRISPR PCR1 and PCR2 indexing - Please use standard Kosuke primers.

  Dataset EGAD00001012232

• Clear cell sarcoma sequencing data

  This study shares DNA and RNA sequencing data from Clear cell sarcoma patients

  Study EGAS00001006072

• ADAPTeR Study: WES data from ccRCC patients

  ADAPTeR study RNAseq from multi-region samples taken pre and post nivolumab.

  Study EGAS00001005638

• OAC RNASeq

  Please see our related publication, 'Molecular profiling to predict immunochemotherapy outcomes in esophageal adenocarcinoma'

  Study EGAS00001006468

• Bolleboom-Gao peri-tumoral snRNA-seq glioblastoma dataset 2022/A

  Bolleboom-Gao peri-tumoral snRNA-seq glioblastoma dataset 2022/A

  Study EGAS00001006935

• Whole Genome Sequence and RNASeq Samples for Lung Cancer

  Short Read Whole Genome Sequence and RNASeq Samples for Lung Cancer

  Study EGAS00001007832

• UCL Lung PCA - Whole exome multiregion sequencing data from human preinvasive airway biopsies

  UCL Lung PCA - Whole exome multiregion sequencing data from human preinvasive airway biopsies

  Dataset EGAD00001015539

• WGS files for paper titled "Preclinical Pediatric Molecular Analysis for Therapy Choice (MATCH)"

  WGS files for paper titled "Preclinical Pediatric Molecular Analysis for Therapy Choice (MATCH)"

  Dataset EGAD00001015697

• Res1_PC9_exp2_MC_01.04.22

  8 cell pellet samples for genomic DNA extraction. CRISPR PCR1 and PCR2 indexing - Please use standard Kosuke primers.

  Dataset EGAD00001012233

• RNA sequencing of ALAL patients

  Transcriptomic data generated by RNA sequencing of 30 adults with acute leukemia of ambiguous lineage (ALAL)

  Dataset EGAD00001015547

• Quick Guide for data submission

  Quick Guide This is a quick guide to submit data to the EGA. Please select data type to display the right detailed instructions. Sequence data Array-based data Get your submission account You first need to create your EGA user. Then, once your account has been verified by the Help Desk team, request your submission account and provide details of the data type and platform(s) in your submission. Register Study/DAC Use Submitter Portal to register your study, samples, Data Access Committee (DAC) and Policy. Upload data Encrypt your data files using the and upload it to your inbox using SFTP. Register experiments and runs Associate each data file to a registered sample and study by Linking files to samples. Details of the experimental procedure you followed must be provided. Finalise your submission Group your runs/analysis into datasets and link them to your new or existing DAC and policy using DAC Portal. Data request are done at a dataset level, thus files within a datasets must share release conditions. Release and admin When finalising the submission, set a released date to instruct our Helpdesk to release your study. All registered studies are automatically placed on hold until the named submission or DAC contact instructs our Helpdesk for the study to be released. Get your submission account Fill the submission form and provide details of the data type and platform(s) in your submission. Register Study/DAC Use EGA Programmatic submission to register your study, samples, Data Access Committee (DAC) and Policy. Upload data Encrypt your data files using the EgaCryptor and upload it using default FTP clients or Aspera. Complete the Array-Format (AF) spreadsheet Download the AF spreadsheet and complete all four sections. Return the spreadsheet to the EGA helpdesk. Release and admin Instruct our Helpdesk to release your study. All registered studies are automatically placed on hold until the named submission or DAC contact instructs our Helpdesk for the study to be released.

  Documentation submission/quickguide

• Gabriel Consortium Data Access Committee

  Dac EGAC00000000014

• McGill ECDAC

  Dac EGAC00001000250

• The EMC-HEMA-AML data access committee controlling the access to AML sequencing data generated in the Hematology department of Erasmus MC

  Dac EGAC00001002230

• EGAD00000000057

  WTCCC project samples from the Parkinson's disase cohort

  Dataset EGAD00000000057

• EGAD00010000777

  HipSci - Bardet-Biedl Syndrome - Genotyping Array - November 2014

  Dataset EGAD00010000777

• EGAD00010000779

  HipSci - Monogenic Diabetes - Genotyping Array - November 2014

  Dataset EGAD00010000779

• EGAD00010000268

  Metabric breast cancer samples (Expression raw data)

  Dataset EGAD00010000268

• EGAD00010000522

  Samples from the Greek island of Crete, MANOLIS cohort

  Dataset EGAD00010000522

• Mutational landscapes of primary triple negative breast cancers - RNA seq

  Mutational landscapes of primary triple negative breast cancers - RNA seq

  Dataset EGAD00001000132

• UK10K_RARE_COLOBOMA REL-2012-01-13

  UK10K_RARE_COLOBOMA REL-2012-01-13

  Dataset EGAD00001000179