22950 results for "ega"

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• Targeted Sequencing Xenturion

  Targeted sequencing of a biobank of PDOs PDXs and LMHs

  Dataset EGAD00001009653

• RNAseq

  RNAseq of pancreatic cancer organoids.

  Dataset EGAD00001010834

• Genome-wide DNA Methylation Analysis Reveals a Unique Methylation Pattern for Pleural Mesothelioma Compared to Healthy Pleura and Other Lung Diseases

  Study EGAS00001007783

• Chordoma_Extension_Study

  Extension analysis to pursue candidate genes of interest in chordoma

  Study EGAS00001000892

• Chordoma_Extension__known_cancer_genes_

  Extension analysis to pursue candidate genes of interest in chordoma

  Study EGAS00001000895

• Giant congenital nevi exome sequencing

  Characterization of the genomic landscape of giant congenital nevi.

  Study EGAS00001004541

• Very short reads file for testing purposes

  Very short FASTQ reads file for testing purposes

  Study EGAS00001001701

• Kidney_tumour_DNA_exome

  This is an exome DNA sequencing study of human renal tumours

  Study EGAS00001003616

• SNP array ARID1B patients

  SNP array ARID1B patients. Data from PBMCs and iPSCs.

  Study EGAS00001007381

• ADAPTeR Study: RNAseq data from ccRCC patients

  RNAseq from tumour, mets, and PEACE study

  Study EGAS00001005637

• WGS

  Whole-genome sequencing of pancreatic cancer organoids and matched germline controls.

  Study EGAS00001007211

• DLBCLR

  Evaluating gene expression in DLBCL using a quantitative nuclease protection assay

  Study EGAS00001007479

• DAC for study: "Combination pembrolizumab and radiotherapy induces systemic anti-tumor immune responses in immunologically-cold non-small cell lung cancer."

  This is Data Access Committee will oversee data sharing for sequence data in the EGA study: "Combination pembrolizumab and radiotherapy induces systemic anti-tumor immune responses in immunologically-cold non-small cell lung cancer." This dataset includes 116 bam files from whole exome sequencing on the Illumina HiSeq2500, 102 fastq files from RNA sequencing on the Illumina NovaSeq 6000. The samples analyzed include tumor/normal DNA samples and tumor RNA samples from 72 individuals with non-small cell lung cancer treated with pembrolizumab and SBRT or pembrolizumab alone on the NCT02492568 trial.

  Dac EGAC50000000202

• atrial appendage miRNA-seq in non-, paroxysmal and persistent atrial fibrillation

  64 left atrial appendages from patients without atrial fibrillation (AF) undergoing cardiac surgery, patients with paroxysmal AF and with persistent AF (~20 per group). Trizol RNA isolation, size selection, single end miRNA sequencing on 4 lanes of illumina NextSeq 500. Provided are FastQ files, one per lane per sample. Additional data (e.g. clinical characteristics, RIN values etc.) can be provided upon request. The same RNA samples (62) were used for transcriptome sequencing. Results from transcriptome sequencing are stored in the EGA database and are managed by the same DAC.

  Dataset EGAD00001007694

• Single cell sequencing of human normal breast myoepithelial cells

  The dataset includes 6 FASTQ files with single cell transcriptome sequencing data of normal breast myoepithelial cells from ducts and TDLUs derived from reduction mammoplasties from three patients. Chromium Single Cell 3’ Reagent Kit v2 or v3 (10x Genomics) were used for processing of cells, whereafter sequencing was performed using the Illumina® NextSeq500/550 High Output Kit v2. Cell Ranger was used for generating FASTQ files and files from different lanes were concatenated prior to uploading the data to EGA.

  Dataset EGAD00001008468

• Glioma Genomics Committee

  Dac EGAC00001000153

• MSI-Exome-DAC Team Microsatellites Instability and Cancer, INSERM Hospital Saint-Antoine, Paris 12, France Carte d'identité des tumeurs, French league against cancer, Paris France

  Dac EGAC00001000665

• UCSF Sebaceous Carcinoma DAC for review of sequence data release from manuscript in Nature Communications, based in the UCSF Departments of Dermatology and Pathology

  Dac EGAC00001000850

• Data access committee (DAC) in the Graduate School of Medical Science and Engineering (GSMSE) at Korea Advanced Institute of Science and Technology (KAIST)

  Dac EGAC00001001643

• Brain Tumor UCSF DAC

  Dac EGAC00001001682

• DAC of The polarity and specificity of antiviral T lymphocyte responses determine susceptibility to SARS-CoV-2 infection in cancer patients and healthy individuals

  Dac EGAC00001002517

• Early on-treatment changes in circulating tumor DNA fraction and response to enzalutamide or abiraterone in metastatic castration-resistant prostate cancer - Data Access Committee

  Dac EGAC00001003128

• EGAD00000000012

  WTCCC1 project Multiple Sclerosis (MS) samples

  Dataset EGAD00000000012

• EGAD00000000048

  Sequencing data from oestrogen-receptor-alpha-positive metastatic lobular breast cancer sample

  Dataset EGAD00000000048

• EGAD00010000722

  Pilot experiment on functional genomics in osteoarthritis (coreex)

  Dataset EGAD00010000722

• EGAD00010000232

  WTCCC2 samples from Type 2 Diabetes Cohort

  Dataset EGAD00010000232

• EGAD00010000296

  1958BC control samples only (Hap550)

  Dataset EGAD00010000296

• EGAD00010000387

  Cambridge control samples using a 1.2M genotyping chip from Illumina

  Dataset EGAD00010000387

• CLL cancer Sample Sequencing

  CLL cancer Sample Sequencing

  Dataset EGAD00001000004

• Various Cancer Fusion Gene Sequencing

  Various Cancer Fusion Gene Sequencing

  Dataset EGAD00001000005

• ADCC Rearrangement Screen

  ADCC Rearrangement Screen

  Dataset EGAD00001000062

• Multifocal Breast Project

  Multifocal Breast Project

  Dataset EGAD00001000068

• Gastric and Esophageal tumour rearrangement screen

  Gastric and Esophageal tumour rearrangement screen

  Dataset EGAD00001000075

• Acute Myeloid Leukemia Sequencing

  Acute Myeloid Leukemia Sequencing

  Dataset EGAD00001000095