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• RNA-seq of HCC patients undergoing sorafenib treatment.

  RNA-seq dataset (BAM files) of 28 HCCs and 19 non-tumor livers derived from 8 patients undergoing sorafenib treatment.

  Dataset EGAD00001008204

• Pediatric high grade glioma RNA-Seq

  We performed RNA-Seq in DIPG and hemispheric HGG.

  Dataset EGAD00001008278

• RNAseq fastq files of MCL control, NOTCH1 & NOTCH2 samples

  Raw RNAseq paired end fastq files of MCL control samples (3 samples) and MCL samples transduced with a retrovirus expressing mutated NOTCH1 (3 samples) or NOTCH2 (3 samples). Instrument used: Illumina NovaSeq 6000

  Dataset EGAD00001008346

• Whole-exome sequencing of HCCs undergoing sorafenib treatment

  Dataset consists of 25 HCCs and 9 non-tumor livers from 8 patients.

  Dataset EGAD00001008216

• Spatial transcriptome sequence data from prostate cancer needle biopsies

  Spatial transcriptome sequencing data from prostate cancer needle biopsies. Dataset contains biopsies from before and after androgen deprivation therapy of 3 patients with 8 biopsies per patient in total. 2 sections (replicates) are taken from each biopsy.

  Dataset EGAD00001008636

• Pheochromocytoma paraganglioma single nuclei RNA-seq

  Single nuclei RNA sequencing (snRNA-seq) on tissue samples from 11 patients (SDHB and RET). Files are fastq files of 10x-5'scRNAseq libraries.

  Dataset EGAD00001008739

• RNAseq of breast cancer bone metastases PDX resistant of responder to IACS-010759 treatment

  Fastq files from RNAseq of breast cancer bone metastases PDX after treatment with IACS-010759. Five PDX are resistants to treatment and 6 are responders.

  Dataset EGAD00001009072

• WES CRAM files of HUG-CEL Covid-19 Genomics Study

  Whole Exome Sequencing Dataset (CRAM files) of 415 admixed Brazilians with Covid-19 extreme phenotypes from recovered nonagenarians and centenarians to deceased adults.

  Dataset EGAD00001009652

• High-throughput transcriptome data of paediatric ETV6-RUNX1 acute lymphoblastic leukemia

  High-throughput transcriptome sequencing data from paediatric (<18-y) ETV6-RUNX1 fusion positive acute lymphoblastic leukemias. Dataset includes fastq and BAM files from diagnostic samples of 33 patients.

  Dataset EGAD00001010164

• Colonbiome shot-gun metagenomics

  156 samples of shot-gun gut metagenomics, corresponding to 51 patients with CRCm 54 patients with adenoma, and 51 healthy controls

  Dataset EGAD00001010068

• Single-cell RNA-sequencing of nivolumab-treated glioblastoma

  Single-cell RNA-sequencing of 8 patients, from primary and relapse tumour (total of 16 samples). Patients were treated with nivolumab prior to relapse surgery.

  Dataset EGAD00001010843

• EGAD00010000516

  Samples from the Pomak Villages in Greece, Pomak isolate

  Dataset EGAD00010000516

• Single-cell B-cell receptor sequencing data of peripheral blood mononuclear cells obtained from 30 ATL patients, 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.

  Single-cell B-cell receptor sequencing (scBCR-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.

  Dataset EGAD00001007013

• WGS and RNA-Seq data from a GBM patient PT-SJ5453

  WGS and RNA-Seq data from a GBM patient PT-SJ5453

  Dataset EGAD00001008529

• WGS and RNA-Seq data from a GBM patient PT-PV2594

  WGS and RNA-Seq data from a GBM patient PT-PV2594

  Dataset EGAD00001008526

• WGS and RNA-Seq data from a GBM patient PT-SS3647

  WGS and RNA-Seq data from a GBM patient PT-SS3647

  Dataset EGAD00001008530

• ALK inhibitors in the context of ALK-dependent cancer cell lines

  ALK inhibitors in the context of ALK-dependent cancer cell lines

  Dataset EGAD00001000078

• A DNA methylation atlas of normal human cell types

  A DNA methylation atlas of normal human cell types. The atlas includes 205 whole-genome bisulfite sequencing (WGBS) samples, from 39 sorted cell types. The samples were paired-end sequenced with 30x coverage.

  Dataset EGAD00001009789

• Guardant ctDNA

  This data table represents each patient molecular response based on ctDNA (using Guardant 360) percentage at baseline and cycle 3 day 1

  Dataset EGAD50000001339

• Olink Target Protein Expression

  Olink Target 96 Inflammation panels were applied to nasal secretions (DC, CRSsNP, CRSwNP, N-ERD, n=20 each). Across both panels, 184 assays (180 unique proteins) were determined, of which 4 appeared in both panels and were measured twice (CCL11, IL10, IL5, IL-6)

  Dataset EGAD50000001328

• Single-cell transcriptomics of hepatoblastoma

  10X Genomics single-cell transcriptomics of hepatoblastoma tissues using Chromium Next GEM Single-Cell 3’ Reagent Kits v3.1. Single-cell transcriptomics data (bam files) of PT9, post-chemotherapy tumor sample, and PT13, treatment naive tumor sample. Single-cell solutions were obtained from viably frozen tissue samples using enzymatic digestion.

  Dataset EGAD50000000794

• EGAD00000000046

  RNA-SEQ data from 3 recurrent and 1 ovarian primary Granulosa Cell Tumour samples

  Dataset EGAD00000000046

• RNA-seq from islet differentiation model

  Whole transcriptome RNA sequencing (RNA-seq) of human induced pluripotent stem cell lines from three independent donors at seven islet developmental stages: definitive endoderm (DE), primitive gut tube (GT), posterior foregut (PF), pancreatic endoderm (PE), endocrine progenitors (EP), endocrine-like cells (EN), and beta-like cells (BLC).

  Dataset EGAD00001003807

• WES of matched primary pediatric T-cell leukemias and PDXs

  Each dataset cosist of WES data from 5 samples (1 patient): original leukemia initial diagnosis T-ALL, original leukemia relapse T-ALL, PDX derived of initial diagnosis T-ALL, PDX derived of relapse T-ALL, remission (normal control)

  Dataset EGAD00001004459

• clonealign: 10X genomics chromium single-cell RNA-sequencing

  10X genomics chromium single-cell RNA-sequencing of (i) patient derived triple negative breast cancer xenograft (ii) primary tumour and ascites ovarian cancer cell lines at tumour recurrence.

  Dataset EGAD00001004552