Search Results - EGA European Genome-Phenome Archive

Dataset for Multiple Myeloma RNA data

This dataset contains 371 case and control RNA sequencing samples of patients with multiple myeloma. Sequencing was performed on Illumina NovaSeq 6000 and HiSeq X, HiSeq 4000 and HiSeq 2000 using TruSeq Stranded RNA and TruSeq Stranded total mRNA Kits. The sequencing was always paired.

Dataset EGAD50000000683

mRNA-Sequencing of 73 primary multiple myeloma (MM) samples and human MM cell lines

mRNA-Sequencing of 73 primary multiple myeloma (MM) samples and human MM cell lines before and after siRNA-mediated knockdown of ADAM8 (n=5 cell lines), ADAM9 (n=7 cell lines) and ADAM15 (n=5 cell lines). Paired-end sequencing was performed on a NovaSeq (Illumina). Fastq and bam files are provided for each sample.

Dataset EGAD50000000575

Dataset for desmoplastic small round cell tumor - RNA

This dataset contains 32 RNA sequencing samples of patients with desmoplastic small round cell tumor. Sequencing was performed on Illumina HiSeq 2500, Illumina HiSeq 4000, Illumina HiSeq X and NovaSeq 6000 using Illumina TruSeq RNA and TruSeq Stranded RNA Kit. The sequencing was always paired.

Dataset EGAD50000000912

Suspected Lynch syndrome dataset

This dataset comprises a genomic and a phenotypic excel sheet displaying 137 cases classified as suspected Lynch syndrome. Included are genotypic data such as tumour mutational burden, tumour mutational signatures and germline/somatic variant calls for each colorectal, endometrial or sebaceous skin tumour screened. Genomic data is derived from targeted multigene panel sequencing including ~300 hereditary cancer genes.

Dataset EGAD50000000031

H3Africa AWIGEN Pilot MetaboChip

Pilot study on the interplay between genetic, epigenetic, and environmental risk factors for obesity and related cardiometabolic diseases with 973 samples from South Africa genotyped on Illumina Human MetaboChip array.

Dataset EGAD00010001258

Sequencing data for oesophageal and related samples - BOs release 5 (RNA)

Dataset EGAD00001005385

WGS - germline - oral squamous cell carcinoma

We conducted a retrospective, single-center Canadian cohort study of patients who underwent primary surgery for OSCC between 2010 and 2024. Nucleic acid quality was assessed using the 4150 TapeStation System (Agilent) prior to library preparation. WGS was performed on germline DNA, following Genome Analysis Toolkit’s (GATK) Best Practices and procedures, with a target of 30X deduplicated coverage per sample, using an Illumina NovaSeq 6000 instrument.

Dataset EGAD50000002608

Whole genome DNA sequencing for two long-lived humans.

Two long-lived human samples were sequenced to a mean 20x coverage genome wide. Sequencing was done using the Illumina hi-seq platform, alignment to GRCh37/hg19 reference genome was done using the BWA alignment tool.

Study EGAS00001000877

WGS dataset for Unraveling mutagenic processes influencing the tumor mutational patterns of individuals with Constitutional Mismatch Repair Deficiency

Molecular characterization of 41 tumors from 17 individuals with CMMRD to gain a better understandig of mutational processes driving subsequent tumor development. The molecular characterization includes the investigation of tumor mutational load and mutational signatures.

Dataset EGAD00001015157

Genome Denmark Phase II - alignments

Alignment of Genome Denmark Phase II dataset to GRCh38. The dataset consists of 150 Danish individuals (50 trios) sequenced to 80X. The BAM-file contains data from multiple libraries created from one individual with libraries of 180, 500, 800, 2000, 5000, 10000 and 20000 bp. The libraries were created using standard Illumina protocols for paired end reads (180-800bp libraries) and mate pair libraries (2kb-20kb).

Dataset EGAD00001003157

ICGC PCAWG Dataset: PACA-AU_PCAWG_RNA-Seq_Star

ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: PACA-AU.

Dataset EGAD00001003410

ICGC PCAWG Dataset: PACA-AU_PCAWG_RNA-Seq_TopHat2

ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: PACA-AU.

Dataset EGAD00001003411

ICGC PCAWG Dataset: OV-AU_PCAWG_RNA-Seq_Star

ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: OV-AU.

Dataset EGAD00001003415

ICGC PCAWG Dataset: OV-AU_PCAWG_RNA-Seq_TopHat2

ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: OV-AU.

Dataset EGAD00001003416

Radiotherapy induced Sarcoma exome (2017-05-17)

Whole exome library making will be performed on genomic DNA derived from radiotherapy induced sarcoma samples and matched normal DNA from the same patients. Next Generation sequencing will be performed on the resulting libraries and mapped to build 37 of the human reference genome to facilitate the identification of mutations This dataset contains all the data available for this study on 2017-05-17.

Dataset EGAD00001003339

Genomic Profiling of Advanced Pancreatic Cancer to inform therapy - RNA-Seq mapped reads

Genomics-Driven Precision Medicine for Advanced Pancreatic Cancer - Early Results from the COMPASS Trial - RNA-Seq mapped reads

Dataset EGAD00001003584

Whole exome analysis of adult type ovarian granulosa cell tumors

Whole exome data from tumor/normal pairs for adult type ovarian granulosa cell tumor sequencing project. This data set contains 24 tumor whome exomes and 20 matched normal whole exomes generated using the Agilent V4 exome hybrid capture platform, with sequencing performed on an Illumina HiSeq 2000. This dataset contains BAM files generated by aligning paired-end reads to the hg19 reference genome.

Dataset EGAD00001003961

48 EXOMES FAMILIAL MYELOID LEUKEMIA (QMUL)

Whole exome sequencing (WES) libraries were prepared from 200ng of genomic DNA using the Agilent SureSelect XT Target Enrichment System for Illumina Paired-End Multiplexed Sequencing Library coupled with the Agilent SureSelect XT Human all exon v6 capture reagent. Libraries were sequenced on a NextSeq 550 sequencer using the High output 300 cycles kit generating 150bp paired end single-indexed reads. Alignment against b37 using Novoalign (version 3.02.08).

Dataset EGAD00001004539

ATAC-SEQ MAIN - PHASE 1

This is a study to test ATAC-seq protocols. CD4+ and CD8+ cells have been obtained from three different anatomical compartments. We aim to assay open-chromatin regions across these cells and perform comparative analyses.This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

Dataset EGAD00001001320

RNA-seq transcriptome of bronchial brush samples from COPD and control

Human subjects (COPD patients or apparently healthy controls) where investigated by bronchoscopy and a 5 mm brush was used to sample the subsegment airways of the right lung. The material obtained mainly consist of bronchial epithelial cells plus some contamination with leukocytes. For further details see Ziegler-Heitbrock et al, European Respiratory Journal, 40:823-829, 2012.

Dataset EGAD00001002003

17491 results for "free coins in fc 26 Visit Buyfc26coins.com for latest FC 26 coins news..Y2KA"

in 28.31 milliseconds.