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• RRBS melanoma biopsies

  RRBS data for melanoma biopsies at baseline and after treatment

  Dataset EGAD00001009060

• Reference epigenome OB56_N_PreA_WGBS data generated from KEP study

  A OB56_N_PreA_WGBS paired end data for Preadipocytes(fat)

  Dataset EGAD00001003479

• Microsatellite unstable colorectal cancers

  Mapped data for 10 Colon MSI cancer samples

  Dataset EGAD00001004500

• Multisample2 Amplicon

  Amplicon data of tumor samples generated for validation of WES findings and further sub clonal mapping

  Dataset EGAD00001004020

• Familial CEBPA-mutated AML whole exome sequencing dataset

  Whole exome sequencing data for AML and matched normal samples

  Dataset EGAD00001000996

• Seminoma exome sequencing

  Exome sequencing data for 8 pairs of seminomas and matched normal

  Dataset EGAD00001001002

• Global Anaplastic Thyroid Cancer Initiative

  Raw whole genome sequence data(fastq) for the GATCI project

  Dataset EGAD00001003236

• Melanoma multi site metastases

  These are caveman, pindel, battenberg and brass calls for index patients' metastatic melanoma genomes within this study.

  Dataset EGAD00001005483

• IMpower133 subtype assignments

  This dataset contains subtype assignments for 271 tumor samples profiled by RNA-seq.

  Dataset EGAD00001006926

• RPPA analysis + clinical data

  RPPA analysis from FAIRLANE Trial of Neoadjuvant Ipatasertib Plus Paclitaxel for Triple-Negative Breast Cancer.

  Dataset EGAD00001008507

• BPH Tissues for Cell Culture and Analysis - Spatial Transcriptomics Identifies Candidate Stromal Drivers of Benign Prostatic Hyperplasia

  The study goal was to apply spatial transcriptomics to identify candidate stromal drivers of benign prostatic hyperplasia (BPH). Laser microdissection (LCM) with RNA-seq of the stroma adjacent to hyperplastic and budding BPH ducts identified secreted factors including IGF1 and CXCL13. Single‐cell RNA sequencing (scRNA‐seq) revealed their co-expression from BPH fibroblasts. Additional studies sought to define similarities to embryonic prostate development, as well as therapeutic applications. Subjects were those who underwent prostatectomy for prostate or bladder cancer, with concurrent BPH, and who consented to use of surplus tissue for research studies. LCM/RNA-seq studies included 5 patients, and scRNA-seq studies included 1 patient. Phenotypic data submitted to this study include patient age, sex, prostate size, and international prostate symptom score (IPSS). Sequencing was done on an Illumina NovaSeq 6000 (LCM/RNAseq) and Illumina HiSeq X-Ten (scRNA-seq). The data processing pipeline utilized Kallisto (LCM/RNA-seq) and Cell Ranger (scRNA-seq). Data submitted are raw sequencing (Fastq) files.

  Study phs003477

• Epitope-linked Ig-seq of self-reactive plasma cells in celiac disease

  Study EGAS00001003658

• Evolutionary predictability of genetic versus non genetic resistance to anticancer drugs in melanoma

  Dac EGAC00001002126

• Somatic mutations predict an aggressive phenotype in meningioma but do not drive grade progression

  Dac EGAC00001002858

• RHD_SA_HC24_Controls

  Healthy volunteers recruited in Samoa

  Dataset EGAD00010000963

• PTPN22 LOTx dataset

  Genotype of PTPN22 SNPs in LOTx donors and recipients

  Dataset EGAD00010001645

• RHD_FJ_HC24_Controls

  Healthy volunteers recruited in Fiji

  Dataset EGAD00010000959

• Expression_CD4_cells

  Expression measurements in CD4 cells

  Dataset EGAD00010001826

• Expression_NK_cells

  Expression measurements in NK cells

  Dataset EGAD00010001825

• Expression_B_cells

  Expression measurements in B cells

  Dataset EGAD00010001828

• Expression_CD8_cells

  Expression measurements in CD8 cells

  Dataset EGAD00010001829

• Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals

  Dac EGAC50000000123

• EBNA2 ChIP-Re-ChIP in primary B-cells infected with EBV virus

  Study EGAS00001007626

• PREGO_birthPlaces

  PREGO indivudals' birthplaces in epsg.io/2154 (RGF93 v1 / Lambert-93 -- France) geographic coordinates.

  Dataset EGAD00010002660

• Multi Omics of glioma in the the Chinese Glioma Genome Atlas (CGGA) project

  Study EGAS00001004729

• Epigenome-wide association study of asthma remission in whole blood and nasal epithelium

  Study EGAS00001004766

• Longitudinal single-cell transcriptomics reveals distinct patterns of recurrence in acute myeloid leukemia

  Study EGAS00001005819

• Multiscale heterogeneity in gastric adenocarcinoma evolution is an obstacle to precision medicine

  Study EGAS00001004525

• Evaluation of the immune effects of tumor-treating electric fields (TTFields) in GBM patients

  Study EGAS00001005392

• A body map of somatic mutagenesis in morphologically normal human tissues (WGS)

  Study EGAS00001005458

• Single-cell characterization of anti-LAG3+anti-PD1 treatment in melanoma patients

  Study EGAS00001005580

• Tumour evolvability metrics predict recurrence in advanced localised prostate cancer (tumour data)

  Study EGAS00001006096

• Tumour evolvability metrics predict recurrence in advanced localised prostate cancer (normal data)

  Study EGAS00001006098

• Determining genome-wide binding of ETS2 by CUT&RUN in primary human macrophages

  Study EGAS00001007560

• Genomics-based characterization and personalized treatment in pleural and peritoneal mesothelioma

  Study EGAS00001007294

• DAC Composition and functional state of T and NK cells in Extramedullary Mulitiple myeloma

  Dac EGAC50000000599

• Stabilising selection causes grossly altered but stable karyotypes in metastatic colorectal cancer

  Study EGAS00001004219

• Stromal cell diversity associated with immune evasion in human triple‐negative breast cancer

  Study EGAS00001005061

• African Partnership for Chronic Disease Research (APCDR) DAC

  Dac EGAC00001000237

• Plasma DNA tissue mapping by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments

  Dataset EGAD00001001602

• HPAH Genotyping data

  Genotyping data for 32 individuals from a family affected by HPAH

  Dataset EGAD00010001633

• WTCCC2 Pre-eclampsia

  Genotype data from the Affymetrix 6.0 platform for 4,375 Colombian pre-eclampsia cases and controls

  Dataset EGAD00010001647

• SMPaeds tumour tissue lcWGS

  Low coverage whole genome sequencing (0.5-4X) for both relapse and archival diagnostic tumour tissue.

  Dataset EGAD50000000784

• BREAKFAST trial DAC

  Data Access Committee for BREAKFAST trial datasets, IFOM-ETS The AIRC Institute of Molecular Oncology and INT Istituto nazionale Tumori Milano, Italy.

  Dac EGAC50000000401

• RCIDIBAPS001

  DAC created by the Research Computing platform of IDIBAPS for the submission of 2 WES (Whole exome sequencing) samples provided by Sergi Castellví-Bel

  Dac EGAC50000000466

• cfDNA whole-genome TAPS data for cancer detection DAC

  80x whole-genome sequencing data from circulating tumour DNA pre-treated with TAPS from 91 patients

  Dac EGAC50000000440

• DAC for "Cross-species Comparison Reveals Therapeutic Vulnerabilities Halting Glioblastoma Progression" with Prof. Dr. Ana Martin-Villalba(a.martin-villalba@dkfz-heidelberg.de), Santiago Cerrizuela(s.cerrizuela@dkfz-heidelberg.de)

  Dac EGAC00001003564

• Ontario Institute for Cancer Research; Biliary Tract Cancer

  Next Generation Sequencing data from Biliary Tract cancers

  Study EGAS50000000972

• SpainUDP Data Access Committee

  Data access committee handling data access requests for RNAseq data related to the Spanish Undiagnosed Rare Diseases Program SpainUDP cohort.

  Dac EGAC50000000932

• Cancer Alliance RNA-Seq PolyA

  PolyA selection transcriptome profiling by high-throughput for individualized cancer interpretation

  Dataset EGAD00001006234