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• Mechanisms of duodenal adenoma development in familial polyposis syndromes

  Study EGAS00001006561

• Mesenchymal niche in myelodysplastic hematopoiesis at single cell resolution

  Study EGAS00001007568

• NK cells in chronic viral hepatitis Data Access Committee

  Dac EGAC50000000530

• MD Anderson Data Access Committee: Pembrolizumab in Advanced Rare Cancers

  Dac EGAC50000000860

• Resident memory CD8 T cell in human lung cancer

  Study EGAS00001004707

• APOBEC mutagenesis in EGFR mutant TKI resistance NSCLCs

  Study EGAS00001005526

• Exome sequencing in CLL re-treated with venetoclax

  Study EGAS00001006158

• RMS_Infinium450K

  Infinium 450K in Rhabdomyosarcoma

  Dataset EGAD00010000897

• Presence of bacterial infection in brains of patients with Huntington's disease

  Dac EGAC00001001222

• DAC for study Exon resequencing in patients with Brugada syndrome

  Dac EGAC00001000006

• DAC for study Population Structure and Genetic Diversity in Argentinean populations

  Dac EGAC00001000426

• DAC for genome-wide association study of prognosis in Crohn's disease

  Dac EGAC00001000568

• Identification of fungal species in brain of AD patients by NGS

  Dac EGAC00001000593

• DAC for study Treg in breast cancer and healthy individuals

  Dac EGAC00001000638

• Genome-wide association study of cervical cancer in East Asian populations

  Dac EGAC00001001024

• Data Access Committee for Rare Coding Variants in Lupus Risk Genes

  Dac EGAC00001001157

• Transcriptomics of dried blood spots in ELGANs Barcelona study

  Dac EGAC00001001193

• Long-read isoform in breast cancer - Data Access Commitee

  Dac EGAC00001001821

• Characterizing microbiome-directed fibre snacks in gnotobiotic mice and humans

  Dac EGAC00001002104

• Differential Presence of Exons in Cell-Free DNA (NIMGenetics/IIS-FJD)

  Dac EGAC00001002885

• Longitudinal dynamics in relapsed and refractory Hodgkin lymphoma Data Commitee

  Dac EGAC50000000108

• Early dexamethasone therapy does not influence pulmonary fibroproliferation in COVID-19

  Study EGAS00001006407

• DAC_ADARIO

  Data access committee for ADARIO / Targeting ADAR1 in Immuno-Oncology

  Dac EGAC50000000343

• Fasting-mimicking diet reshapes antitumor immunity in cancer patients

  Study EGAS00001004944

• Gene expression in CSF and blood of patients with pneumococcal meningitis

  Study EGAS00001003355

• Aberrant EZHIP Expression Drives Tumorigenesis in Osteosarcoma

  Study EGAS00001007531

• Accelerated single cell seeding in relapsed multiple myeloma

  Study EGAS00001004404

• Whole-genome sequencing of lymphomas in immune-privileged sites

  Study EGAS00001005367

• Cell of Origin and Early Evolution of Leukemia in Down Syndrome

  Study EGAS00001004780

• NGS based Aspergillus detection in liquid biopsies of immunocompromised patients

  Study EGAS00001008021

• Microbiota, Appetite, and Malnutrition in Dutch Community-dwelling older adults

  Study EGAS00001005319

• Characterization of alternative promoter usage in advanced prostate cancer

  Study EGAS00001006275

• Whole exome sequencing and RNA sequencing of patient-derived pancreas neoplasm organoids

  Pancreatic cancers arise from two different precursors; intraductal papillary mucinous neoplasms (IPMN) and pancreatic intraepithelial neoplasm (PanIN), while biological differences in cancers originated from them remain obscure. Here, we analyzed their genomic and transcriptomic landscapes using patient-derived organoids.

  Study JGAS000263

• RNAseq of preneoplasia lung adenocarcinoma

  RNA sequencing of 168 pulmonary samples including lung preneoplasia atypical adenomatous hyperplasia (AAH, N=38), adenocarcinoma in situ (AIS, N=22), minimally invasive adenocarcinoma (MIA, N=19) and invasive lung adenocarcinoma (ADC, N=38) and adjacent lung tissues (Normal, N=62).

  Study EGAS50000000271

• Whole exome sequencing of Ewing and CIC-DUX4 sarcoma tumoroid models

  Tumoroid models from Ewing sarcoma and CIC-DUX4 sarcoma models were generated from patient tumor biopsies. Tumoroids were established in 3D matrigel domes and then propagated on a matrige layer. Whole exome sequencing was performed with established tumoroid models.

  Study EGAS50000000379

• RNA sequencing of Ewing and CIC-DUX4 sarcoma tumoroid models

  Tumoroid models from Ewing sarcoma and CIC-DUX4 sarcoma models were generated from patient tumor biopsies. Tumoroids were established in 3D matrigel domes and then propagated on a matrige layer. RNA sequencing was performed with established tumoroid models.

  Study EGAS50000000380

• Large B cell lymphomas with CCND1 rearrangement have different immunoglobulin gene breakpoints and genomic profile than mantle cell lymphoma

  Next-generation sequencig data including whole-genome sequencing, whole-exome sequencing, and capture-based gene panels of large B cell lymphomas with CCND1 rearrangementas described in Özoğul,Montaner, Pol et al 2024.

  Study EGAS50000000564

• Parallel Detections of Somatic Gene Mutations in Surgically Resected Tumor tissues and Matched Plasma Specimens in Early-Stages of Primary Breast Cancer

  We developed two panel successively, contain 68 and 136 genes respectively. Combination with ultrasound or mammography, it could be used for breast cancer early detection and avoided unnecessary surgery or other invasive detection.

  Study EGAS00001003075

• Transcriptome sequencing of myelodysplasia

  Transcriptome sequencing was performed on 214 patients with myelodysplasia in this study. RNA was obtained from bone marrow CD34+ cells (n=100) and/or bone marrow mononuclear cells (n=165). Transcriptome sequencing was performed for both cell fractions in 51 patients. A total of 211 patients were genotyped by targeted deep sequencing. We also studied bone marrow CD34+ cells and bone marrow mononuclear cells obtained from three healthy adults each.

  Dataset EGAD00001003891

• PanCurX Translational Research Initiative - RNA-Seq mapped and unmapped reads

  Integration of Genomic and Transcriptional Features in Pancreatic Cancer Reveals Increased Cell Cycle Progression in Metastases - RNA-Seq mapped and unmapped reads

  Dataset EGAD00001004548

• HLF COPD Transcriptomics

  We generated transcriptomes of primary human lung fibroblasts (HLFs) isolated from distal parenchyma of ex-smoker controls and COPD patients, with both mild and severe disease. RNA sequencing analysis demonstrated dysregulation of genes involved in proliferation, DNA repair, and extracellular matrix organization.

  Study EGAS00001006602

• Human Biofluid RNA Atlas

  This dataset contains small RNA sequencing data and mRNA capture sequencing data from 20 different human biofluids (amniotic fluid, aqueous humor, ascites, bile, bronchial lavage fluid, breast milk, cerebrospinal fluid, colostrum, gastric fluid, pancreatic cyst fluid, plasma, saliva, seminal fluid, serum, sputum, stool, synovial fluid, sweat, tear fluid and urine). In total, 180 samples were sequenced. Files are provided in fastQ format. Samples were sequenced on a NextSeq 500.

  Dataset EGAD00001005439

• Transcriptomic Profile of Colorectal Cancer Samples

  Samples encompass primary colorectal tumors or metastasis of 75 patients, collected by Medical Pathologists from surgically removed specimens. Tissues were embedded in optimal cutting temperature (OCT) medium, snapshot frozen in liquid nitrogen within 40 minutes of collection and preserved at -80ºC. Samples were collected between June 2010 and October 2017 as part of a prospective biobanking project.

  Dataset EGAD00001009506

• Genetics of gene expression in primary human immune cells Data Access Committee

  Dac EGAC00001003318

• Genetics of gene expression in primary human immune cells Data Access Committee

  Dac EGAC00001003327

• DAC for study Screening for abnormal CGI methylation in primary colorectal tumours

  Dac EGAC00001000069

• Associations between APOE and cognitive ability in Generation Scotland.

  Dac EGAC00001000332

• GWAS data (Illumina 2.5 M SNPs) in Cuban cohorts of dengue disease

  Dac EGAC00001000601

• Presence of fungal infection in brains of patients with Parkinson's disease (PD).

  Dac EGAC00001001199

• Chromatin Profiles in PRAD - Englander Institute for Precision Medicine - Weill Cornell Medicine

  Dac EGAC00001002559