ICGC PanCancer Analysis of Whole Genomes - EGA European Genome-Phenome Archive

Study ID	Alternative Stable ID	Type
EGAS00001001692		Cancer Genomics

Study ID

Alternative Stable ID

Type

EGAS00001001692

Cancer Genomics

Study Datasets 37 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Samples
EGAD00001002016	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LICA-FR. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LICA-FR.	12
EGAD00001002119	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LAML-KR. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LAML-KR.	18
EGAD00001002120	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: ORCA-IN. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: ORCA-IN.	26
EGAD00001002121	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BTCA-SG. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BTCA-SG.	24
EGAD00001002122	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BRCA-UK. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BRCA-UK.	90
EGAD00001002123	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: MALY-DE. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: MALY-DE.	202
EGAD00001002124	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: EOPC-DE. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: EOPC-DE.	113
EGAD00001002125	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BOCA-UK. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BOCA-UK.	148
EGAD00001002126	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PRAD-UK. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PRAD-UK.	116
EGAD00001002127	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PBCA-DE. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PBCA-DE.	496
EGAD00001002128	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PRAD-CA. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PRAD-CA.	244
EGAD00001002129	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BRCA-EU. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BRCA-EU.	158
EGAD00001002130	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: CLLE-ES. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: CLLE-ES.	194
EGAD00001002131	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: RECA-EU. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: RECA-EU.	190
EGAD00001002132	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PACA-AU. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PACA-AU.	192
EGAD00001002153	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PAEN-IT. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PAEN-IT.	74
EGAD00001002154	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PAEN-AU. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PAEN-AU.	98
EGAD00001002155	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LIRI-JP. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LIRI-JP.	524
EGAD00001002156	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: ESAD-UK. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: ESAD-UK.	198
EGAD00001002157	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: MELA-AU. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: MELA-AU.	140
EGAD00001002662	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LINC-JP. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LINC-JP.	62
EGAD00001002664	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: CMDI-UK. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: CMDI-UK.	98
EGAD00001003132	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: GACA-CN. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: GACA-CN.	84
EGAD00001003162	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PACA-CA. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PACA-CA.	298
EGAD00001003227	ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: OV-AU. ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: OV-AU.	146
EGAD00001003410	ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: PACA-AU. ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: PACA-AU.	81
EGAD00001003411	ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: PACA-AU. ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: PACA-AU.	81
EGAD00001003415	ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: OV-AU. ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: OV-AU.	93
EGAD00001003416	ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: OV-AU. ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: OV-AU.	93
EGAD00001003546	ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: LIRI-JP. ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: LIRI-JP.	130
EGAD00001003547	ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: LIRI-JP. ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: LIRI-JP.	130
EGAD00001003548	ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: CLLE-ES. ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: CLLE-ES.	74
EGAD00001003549	ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: CLLE-ES. ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: CLLE-ES.	74
EGAD00001003558	ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: RECA-EU. ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: RECA-EU.	100
EGAD00001003559	ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: RECA-EU. ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: RECA-EU.	100
EGAD00001003560	ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: MALY-DE. ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: MALY-DE.	99
EGAD00001003561	ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: MALY-DE. ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: MALY-DE.	99

Dataset ID

Description

Technology

Samples

EGAD00001002016

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LICA-FR.

EGAD00001002119

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LAML-KR.

EGAD00001002120

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: ORCA-IN.

EGAD00001002121

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BTCA-SG.

EGAD00001002122

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BRCA-UK.

EGAD00001002123

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: MALY-DE.

202

EGAD00001002124

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: EOPC-DE.

113

EGAD00001002125

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BOCA-UK.

148

EGAD00001002126

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PRAD-UK.

116

EGAD00001002127

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PBCA-DE.

496

EGAD00001002128

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PRAD-CA.

244

EGAD00001002129

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: BRCA-EU.

158

EGAD00001002130

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: CLLE-ES.

194

EGAD00001002131

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: RECA-EU.

190

EGAD00001002132

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PACA-AU.

192

EGAD00001002153

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PAEN-IT.

EGAD00001002154

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PAEN-AU.

EGAD00001002155

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LIRI-JP.

524

EGAD00001002156

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: ESAD-UK.

198

EGAD00001002157

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: MELA-AU.

140

EGAD00001002662

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LINC-JP.

EGAD00001002664

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: CMDI-UK.

EGAD00001003132

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: GACA-CN.

EGAD00001003162

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: PACA-CA.

298

EGAD00001003227

ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: OV-AU.

146

EGAD00001003410

ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: PACA-AU.

EGAD00001003411

ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: PACA-AU.

EGAD00001003415

ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: OV-AU.

EGAD00001003416

ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: OV-AU.

EGAD00001003546

ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: LIRI-JP.

130

EGAD00001003547

ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: LIRI-JP.

130

EGAD00001003548

ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: CLLE-ES.

EGAD00001003549

ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: CLLE-ES.

EGAD00001003558

ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: RECA-EU.

100

EGAD00001003559

ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: RECA-EU.

100

EGAD00001003560

ICGC PCAWG Dataset for RNA-Seq BAM aligned using Star. Project: MALY-DE.

EGAD00001003561

ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: MALY-DE.

Study

Study Description

Study Datasets 37 datasets.

Who archives the data?

Publications

Citations

The European Genome-phenome Archive (EGA) is part of the ELIXIR infrastructure.