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ICGC PanCancer Analysis of Whole Genomes

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001002016 12
EGAD00001002119 18
EGAD00001002120 26
EGAD00001002121 24
EGAD00001002122 90
EGAD00001002123 202
EGAD00001002124 113
EGAD00001002125 148
EGAD00001002126 116
EGAD00001002127 496
EGAD00001002128 244
EGAD00001002129 158
EGAD00001002130 194
EGAD00001002131 190
EGAD00001002132 192
EGAD00001002153 74
EGAD00001002154 98
EGAD00001002155 524
EGAD00001002156 198
EGAD00001002157 140
EGAD00001002662 62
EGAD00001002664 98
EGAD00001003132 84
EGAD00001003162 298
EGAD00001003227 146
EGAD00001003410 81
EGAD00001003411 81
EGAD00001003415 93
EGAD00001003416 93
EGAD00001003546 130
EGAD00001003547 130
EGAD00001003548 74
EGAD00001003549 74
EGAD00001003558 100
EGAD00001003559 100
EGAD00001003560 99
EGAD00001003561 99
Publications Citations
Mutation hotspots at CTCF binding sites coupled to chromosomal instability in gastrointestinal cancers.
Nat Commun 9: 2018 1520
77
Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma.
Nat Commun 10: 2019 1459
59
Pan-cancer analysis of whole genomes.
Nature 578: 2020 82-93
1198
A practical framework and online tool for mutational signature analyses show inter-tissue variation and driver dependencies.
Nat Cancer 1: 2020 249-263
115
Timing the initiation of multiple myeloma.
Nat Commun 11: 2020 1917
70
Accurate and efficient detection of gene fusions from RNA sequencing data.
Genome Res 31: 2021 448-460
140
Alternative lengthening of telomeres is not synonymous with mutations in ATRX/DAXX.
Nat Commun 12: 2021 1552
23
Structural Variants at the <i>BRCA1/2</i> Loci are a Common Source of Homologous Repair Deficiency in High-grade Serous Ovarian Carcinoma.
Clin Cancer Res 27: 2021 3201-3214
14
dbGENVOC: database of GENomic Variants of Oral Cancer, with special reference to India.
Database (Oxford) 2021: 2021 baab034
1
Whole-genome sequencing reveals complex genomic features underlying anti-CD19 CAR T-cell treatment failures in lymphoma.
Blood 140: 2022 491-503
22
The genomic and transcriptional landscape of primary central nervous system lymphoma.
Nat Commun 13: 2022 2558
29
A pan-cancer compendium of chromosomal instability.
Nature 606: 2022 976-983
78
Substitution mutational signatures in whole-genome-sequenced cancers in the UK population.
Science 376: 2022 science.abl9283
73
<i>BTG1</i> mutation yields supercompetitive B cells primed for malignant transformation.
Science 379: 2023 eabj7412
9
Molecular Evolution of Classic Hodgkin Lymphoma Revealed Through Whole-Genome Sequencing of Hodgkin and Reed Sternberg Cells.
Blood Cancer Discov 4: 2023 208-227
7
Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns.
Elife 12: 2023 e81224
0
Extrachromosomal DNA in the cancerous transformation of Barrett's oesophagus.
Nature 616: 2023 798-805
18
Long-molecule scars of backup DNA repair in BRCA1- and BRCA2-deficient cancers.
Nature 621: 2023 129-137
2
Sequence dependencies and mutation rates of localized mutational processes in cancer.
Genome Med 15: 2023 63
1
The m<sup>6</sup>A-related gene signature stratifies poor prognosis patients and characterizes immunosuppressive microenvironment in hepatocellular carcinoma.
Front Immunol 14: 2023 1227593
0
Most large structural variants in cancer genomes can be detected without long reads.
Nat Genet 55: 2023 2139-2148
5
A deep-learning-based genomic status estimating framework for homologous recombination deficiency detection from low-pass whole genome sequencing.
Heliyon 10: 2024 e26121
0