Search Results - EGA European Genome-Phenome Archive

MGA-NUTM1 fusion in high grade spindle cell sarcoma Data

There is a total of 4 sample data (2 WGS and 2 RNAseq) belong to 2 patient deposited in this study.

Dataset EGAD00001004479

Exome sequencing of a novel cervical cancer cell line

In this work, we establish and characterized a low-passage cervix cancer cell line from a Brazilian patient with squamous cell carcinoma. The dataset contains three samples from the same patient (blood, tumor tissue and the primary cell line). The technology used was exome sequencing and the file type available is fastq files.

Dataset EGAD00001004480

Whole genome sequencing and whole exome sequencing of pediatric osteosarcoma

Whole genome sequencing and whole exome sequencing of 13 pediatric osteosarcoma patients including 13 primary, 10 metastatic, and 3 relapsed tumors.

Dataset EGAD00001004482

Adeno-associated virus in the liver: natural history and consequences in tumor development

Adeno-associated virus (AAV) is a defective mono-stranded DNA virus, endemic in human population (35-80%). Recurrent clonal AAV2 insertions are associated with the pathogenesis of rare human hepatocellular carcinoma (HCC) developed on normal liver. This study aimed to characterize the natural history of AAV infection in the liver and its consequence in tumor development. In silico analyses using viral capture data explored viral variants and new clonal insertions. Clonal AAV insertions were positive selected during HCC development on non-cirrhotic liver challenging the notion of AAV as a non-pathogenic virus.

Dataset EGAD00001004484

A uveal melanoma patient with MBD4 mutation

Tumour and control from a patient with uveal melanoma with a MBD4 germline mutation. Samples were whole exome sequenced.

Dataset EGAD00001004496

Single-cell RNA-seq of immune cells from Melanoma tumors (Li et al, 2018)

Single-cell RNA-seq profiling of immune cells sorted from human Melanoma tumors (and several matching PBMC samples). Contains de-multiplexed FASTQ files per plate (MARS-seq amplification batch, total 204 samples) and also de-multiplexed FASTQ files of single-cell TCRb-seq.

Dataset EGAD00001004497

Whole Exome Sequencing

Whole exome sequencing data of 19 snap-frozen peritoneal mesothelioma (tumor) samples and 16 matched normal samples. Sequencing library was prepared using Ion AmpliSeq Exome RDY Library Preparation. Samples were sequenced on the Ion Proton System using the Ion PI Hi-Q Sequencing 200 Kit and Ion PI v3 chip.

Dataset EGAD00001004503

Whole Transcriptome Sequencing

RNA-seq data of 15 snap-frozen tissue of peritoneal mesothelioma. The strand specific RNA library prepared using TruSeq (Illumina) and pair-end sequencing performed in Illumina HiSeq 4000. The datasets contains paired fastq files for each of 15 tumor samples.

Dataset EGAD00001004504

Ewing's Sarcoma Whole Genome Sequencing

54 WGS Ewing's sarcoma samples sequenced at The Hospital for Sick Children Toronto (Adam Shlien's lab) and published on Science 2018. Reference Anderson et al. "Rearrangement bursts generate canonical gene fusions in bone and soft tissue tumors"

Dataset EGAD00001004589

EORTC study on the evolution of driver mutations and MGMT promotor methylation in glioblastomas treated with standard of care: Correlation with survival and impact on trial design

Precision medicine trials in glioblastoma should be conducted at tumor recurrence. However, second surgery for recurrent GBMs is not routinely performed and therefore molecular data is predominantly derived from primary samples. This study aims to establish the frequency of driver changes at tumor recurrence.

Dataset EGAD00001004593

5270 results for "*oma"

in 24.51 milliseconds.

MGA-NUTM1 fusion in high grade spindle cell sarcoma Data

Exome sequencing of a novel cervical cancer cell line

Whole genome sequencing and whole exome sequencing of pediatric osteosarcoma

Adeno-associated virus in the liver: natural history and consequences in tumor development

A uveal melanoma patient with MBD4 mutation

Single-cell RNA-seq of immune cells from Melanoma tumors (Li et al, 2018)

Whole Exome Sequencing

Whole Transcriptome Sequencing

Ewing's Sarcoma Whole Genome Sequencing

EORTC study on the evolution of driver mutations and MGMT promotor methylation in glioblastomas treated with standard of care: Correlation with survival and impact on trial design

Genome and transcriptome sequence data from a mucinous colloid carcinoma of the pancreas patient

Genome and transcriptome sequence data from a metastatic melanoma patient

Genome and transcriptome sequence data from a non-small cell adenocarcinoma patient

Genome and transcriptome sequence data from a metastatic leiomyosarcoma patient

Genome and transcriptome sequence data from a metastatic synovial sarcoma patient

Genome and transcriptome sequence data from a metastatic squamous cell carcinoma of the cheek patient

Genome and transcriptome sequence data from a leiomyosarcoma patient

Genome and transcriptome sequence data from a osteosarcoma patient

Genome and transcriptome sequence data from a metastatic adenocarcinoma of the rectosigmoid patient

Genome and transcriptome sequence data from a non-small cell lung carcinoma patient

Genome and transcriptome sequence data from a double-hit lymphoma patient

Genome and transcriptome sequence data from a metastatic basal cell carcinoma of frontal scalp patient

Genome and transcriptome sequence data from a metastatic adenocarcinoma of the stomach patient

Genome and transcriptome sequence data from a metastatic squamous cell carcinoma of the cervix patient

Genome and transcriptome sequence data from a ganglioglioma of the left temporal lobe patient