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• BLUEPRINT release August 2016, RNA-Seq for macrophage - T=6days B-glucan, on genome GRCh38

  RNA-Seq data for 4 macrophage - T=6days B-glucan sample(s). 4 run(s), 4 experiment(s), 4 analysis(s) on human genome GRCh38. Part of BLUEPRINT release August 2016. Analysis documentation available at http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/20160816/homo_sapiens/README_rnaseq_analysis_crg_20160816

  Dataset EGAD00001002522

• The dataset for Genome-wide cell-free DNA fragmentation in patients with cancer

  The dataset for Genome-wide cell-free DNA fragmentation in patients with cancer includes 538 bam files from whole genome next-generation sequencing on the Illumina HiSeq2500. The samples analyzed include plasma samples from healthy individuals and patients with cancer.

  Dataset EGAD00001005339

• Genomic and transcriptomic data of glioma specimens

  Dataset consists of 207 glioma samples of WHO grades II, III and IV. Dataset consists 182 tumor derived genomic data of ~700 cancer-related and epigenetic-related genes with matched blood samples for 48 specimens. Dataset also consists transcriptomic data for 105 specimens. In total 335 bam files were deposited.

  Dataset EGAD00001006299

• NHLBI TOPMed: Chicago Initiative to Raise Asthma Health Equity (CHIRAH)

  The CHIRAH project was a community-based study of the factors associated with asthma morbidity in the African American population. CHIRAH evaluated the role of various variables (biologic/environmental, psychologic/behavioral, and socioeconomic) on asthma morbidity and the function of changes in these variables on asthma morbidity in a longitudinal fashion. This involved collection of a cohort-based on school screening which was sampled to include similar numbers of underprivileged and non-underprivileged subjects which roughly equally represented self-reported African Americans and self-reported non-African Americans. Subjects were followed up every 3 months of this cohort over the course of 2 years.

  Study phs001605

• Characterization of the oral and gut microbiome of melanoma patients before initiation of ant-PD-1 therapy, and confirmation of the phenotype in germ-free mice

  The oral and gut microbiomes of melanoma patients were characterized before the initiation of ant-PD1 immunotherapy, and compared to treatment response. Validation studies were performed in germ-free mice using stool from patients who responded/did not respond to ant-PD1 immunotherapy. All baseline oral(n=86) and gut (n=43) microbiome samples were subject to 16S sequencing - V4 region ( merged fastq files have been made available through this portal). Whole genome shotgun sequencing (WGS) was performed on a subset of fecal samples (n=25)- these files are also available( paired end reads). Also available are 16S sequencing results of stool samples from donors (n=2) used in fecal microbiota transplant and murine samples (n=12) from germ-free mice transplanted with stool from responder/non-responder patients. The fastq files associated with this dataset are stored at ENA under the following links: Fecal 16S – PRJEB22894 https://www.ebi.ac.uk/ena/browser/view/PRJEB22894 Oral 16S – PRJEB22874 https://www.ebi.ac.uk/ena/browser/view/PRJEB22874 Murine 16S – PRJEB22895 https://www.ebi.ac.uk/ena/browser/view/PRJEB22895 Fecal WGS – PRJEB22893 https://www.ebi.ac.uk/ena/browser/view/PRJEB22893

  Dataset EGAD00001003943

• DAC for human liver NPC single cell project

  Dac EGAC00001003207

• Data Access Commitee for skin scRNA-seq

  Dac EGAC00001003129

• DAC for Rare Disease Studies from the Broad Institute

  Dac EGAC00001000566

• DAC for study PTP and Vel Exome Sequencing

  Dac EGAC00001000013

• DAC for Cell Line Data Test of TraIT

  Dac EGAC00001000436

• DAC for Department of Haematology, Aalborg University Hospital

  Dac EGAC00001000543

• DAC for Sardinia Leukocytes polyA RNAseq 624 project

  Dac EGAC00001000561

• DAC for the Prostate Cancer Lymph Node dataset

  Dac EGAC00001000586

• Data Access Committee for Institut Curie Data

  Dac EGAC00001000623

• Data Access Committee for Institut Curie

  Dac EGAC00001000670

• The Shlien Lab, The Hospital for Sick Children

  Dac EGAC00001000942

• Data Access Commitee for gastric cancer ascites

  Dac EGAC00001001026

• DAC for study EGAS00001003438: Clonal Heterogeneity in Glioblastoma

  Dac EGAC00001001118

• DAC for MCO colorectal cancer genomics at UNSW

  Dac EGAC00001001122

• The Shlien Lab, The Hospital for Sick Children

  Dac EGAC00001001125

• DAC for Genomic characterization of metastatic breast cancers

  Dac EGAC00001001129

• DAC for GAMuT Project - Peter MacCallum Cancer Centre

  Dac EGAC00001001154

• DAC for the study EGAS00001003368

  Dac EGAC00001001270

• DAC for GAMuT Project - Peter MacCallum Cancer Centre

  Dac EGAC00001001278

• DAC for Genomics of MDS Freiburg Germany

  Dac EGAC00001001294