15028 results for "cancer studies using rna-seq"

in 44.61 milliseconds.

• Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment

  Study EGAS00001003886

• Matched Pair Cancer Cell line Whole Genomes

  Matched Pair Cancer Cell line Whole Genomes

  Dataset EGAD00001000145

• ICGC prostate cancer miRNA sequencing

  ICGC prostate cancer miRNA sequencing

  Dataset EGAD00001000304

• Esophageal cancer

  Genome-wide NanoRCS of cfDNA from plasma of Esophageal cancer patients

  Dataset EGAD50000000221

• Pilot data of PDiamond Lung Cancer Data

  RNAseq pilot data of PDiamond Korean lung cancer data

  Dataset EGAD50000000843

• Genomic analysis of Japanese gastric cancer

  fastq of 345 Japanese gastric cancer

  Dataset EGAD00001004051

• Young Boost Trial for Breast Cancer patients

  The Young Boost Trial (YBT, YOUNG BOOST / BOOG 2004-01 (Borstkanker) | Kanker.nl investigated the optimal radiation dose for breast cancer patients aged 50 years or younger, treated with breast-conserving therapy (BCT). In this randomized study, participants were assigned to receive either a 26 Gy or a 16 Gy radiation boost, with the primary endpoint being local recurrence. To explore potential predictive biomarkers of treatment response in this patient group, whole exome sequencing (WES) was performed on tumor samples to identify genetic factors that could guide personalized treatment strategies and improve clinical outcomes for these young breast cancer patients.

  Study EGAS50000000797

• VIKING Health Study - Shetland 30X WGS

  30x whole genome sequencing of samples from the VIKING Health Study - Shetland. 500 DNA samples were sequenced using the Illumina HiSeq X system. FASTQ files are deposited

  Dataset EGAD00001005378

• HumanMethylation450_NL

  This dataset includes IDAT files from 2,790 blood samples. The samples were profiled using the Illumina Infinium HumanMethylation450 (450k) BeadChip.

  Dataset EGAD00010001938

• Methylation profiling of sarcoma and TFCP2-rearranged rhadomyosarcoma samples

  Methylation profiling of 345 sarcoma and TFCP2-rearranged rhadomyosarcoma samples, using the approach described "Genomic, transcriptomic, functional, and mechanistic characterization of rhabdomyosarcoma with FUS-TFCP2 or EWSR1-TFCP2 fusions"

  Dataset EGAD00010002451

• SECRETO Oral metagenome

  The dataset comprises data for n=329 participants who underwent saliva sampling. Shotgun metagenomic paired-end sequencing was conducted using the Illumina NovaSeq 6000 platform, and the resulting files are in FASTQ format.

  Dataset EGAD50000000283

• Guardant ctDNA

  This data table represents each patient molecular response based on ctDNA (using Guardant 360) percentage at baseline and cycle 3 day 1

  Dataset EGAD50000001339

• LBC1936 gvcfs

  1075 members of the LBC1936 were sequenced using the Illumina HiSeq X platform. This dataset contains the gvcfs.

  Dataset EGAD00001006414

• Somatic mutations called from whole-exome sequencing of PSCCE

  We performed whole-exome sequencing on 46 pairs of PSCCE and matched normal sample. Somatic mutations were called using MuTect2.

  Dataset EGAD00001006743

• 666PG genomic rearrangements

  Genomic rearrangement calls generated using Delly in VCF format from the CPCGene 666PG study

  Dataset EGAD00001006146

• multi regional whole exome sequencing of gastric adenocarcinoma

  Multiregional whole-exome sequencing was done using 48 tumor samples (range: 4-10 tumor samples/patient) from 9 patients with adenocarcinomas of the stomach and gastroesophageal junction (GC)

  Dataset EGAD00001006251

• New Caledonia low-coverage whole-genome sequencing data

  Mapped sequence reads in BAM format for 64 individuals reporting Kanak ancestry recruited in New Caledonia sequenced at four times target coverage using the Illumina HiSeq 4000 platform.

  Dataset EGAD00001002665

• Exome reads

  One sample of human genomic DNA. DNA extracted from whole blood. Reads obtained using an exome enrichment kit (Truseq, Illumina) and sequencing of 100bp paired-end reads on a HiSeq 2500 sequencing system (Illumina).

  Dataset EGAD00001003841

• Southern African Human Genome Programme dataset

  The SAHGP characterises the genomes of 24 individuals (8 Coloured and 16 black southeastern Bantu-speakers) using deep whole genome sequencing (WGS).

  Dataset EGAD00001003791

• PacBio WGS based analysis of complex chromosomal rearrangements

  The dataset consists of a single sample whereby the genomic DNA was analysed using PacBio WGS at 30x coverage to assess the breakpoint sites of complex chromosomal rearrangements.

  Dataset EGAD00001015593

• Deep sequencing of 151 cancer genes

  Deep sequencing of 151 cancer genes in 6 synchronous CRC of 3 patients

  Dataset EGAD00001001870

• Whole genome sequencing of 64 HER2-Positive Breast Cancer

  Whole genome sequencing of 64 HER2-Positive Breast Cancer

  Dataset EGAD00001001844

• Scalable ultra-high-throughput multiplexed single-cell chromatin and RNA profiling reveals gene regulatory dynamics during stimulation time courses and CRISPR perturbation screens

  Data for 1) hiPSC-derived macrophages across a polarization time course from the naive M0-state to the M1- and M2-states, 2) Primary T-cells differentiated to helper subtypes, and 3) spontaneous differentiation of hiPSCs upon perturbation of GATA2, NR4A2 or SOX17

  Dac EGAC50000000485

• Waldenström Macroglobulinemia Single-Cell Data Access Committee

  This Data Access Committee (DAC) is responsible for reviewing and approving access requests for controlled-access human single-cell sequencing data, including single-cell RNA sequencing and immune receptor profiling, generated from patients with Waldenström macroglobulinemia. The DAC ensures that all data access requests comply with the informed consent provided by study participants and are consistent with applicable ethical and regulatory requirements.

  Dac EGAC50000000863

• Single cell study of infant leukemias

  We have performed single cell RNA-sequencing for infant and childhood B-cell acute lymphoblastic leukemias as well as infant acute myeloid leukemias at diagnosis. The sequencing was performed with 10X Chromium single cell 3’ and 5’ chemistry.

  Dataset EGAD00001007853