22951 results for "ega"

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• T19_Yemen

  Sequencing of 50 individuals from Yemen to study the demographic history of the region

  Study EGAS00001002083

• BLUEPRINT EpiVar RNA-seq for Naive naive CD4+ T-cells

  BLUEPRINT EpiVar RNA-seq for Naive naive CD4+ T-cells

  Study EGAS00001000752

• T19_Chad_xten

  Sequencing of 8 individuals from Chad to study the demographic history of the region

  Study EGAS00001002082

• HCA_Skin_Disease_Atopic_dermatitis_Wellcome_Spatial_Managed_Access

  Spatial transcriptomics of skin and PBMC samples from eczema patients, pre and post dupilumab treatment

  Study EGAS00001006482

• Haemoglobin_E_beta_thalassaemia_in_a_patient_group_from_Sri_Lanka

  Exome sequencing of 32 patient samples from Sri Lanka with the condition haemoglobin E beta thalassaemia

  Study EGAS00001000626

• Epilepsy_related_sudden_death

  These samples include exome sequences of samples from patients who suffered Sudden Unexplained Death in Epilepsy

  Study EGAS00001000352

• Study of non-clear cell renal cell carcinoma

  Study of non-clear cell renal cell carcinoma

  Study EGAS00001000926

• MIBS MGS

  Metagenomic sequencing of the human gut in Maastricht IBS studies, cases and controls.

  Study EGAS00001001924

• UK10K COHORT IMPUTATION

  Imputation panel created from UK10K_COHORT_ALSPAC (EGAD00001000740) and UK10K_COHORT_TWINSUK (EGAD00001000741) datasets.

  Study EGAS00001000713

• Ulcerative colitis study - WES data

  Whole Exome Sequencing data of Single crypts, bulk crypt samples, and colitis-associated cancer.

  Study EGAS00001003801

• Whole-exome sequencing of HCC patients undergoing sorafenib treatment

  Whole-exome sequencing of hepatocellular carcinomas at various stages of sorafenib treatment

  Study EGAS00001005661

• Res1_H23_exp2_MC_13.07.22

  8 samples are cell pellets for genomic DNA extraction. CRISPR PCR1 and PCR2 indexing - Please use standard Kosuke primers.

  Dataset EGAD00001012234

• RNA-seq of human embryonic heart, lung, and cerebellum

  Characterization of cell types in the human embronic heart, lung, and cerebellum.

  Study EGAS00001004375

• Validation of a genome-wide polygenic score for body mass index in South Asians

  Genotyping data of BMI model markers generated using Global Screening Array (Illumina Inc.)

  Dataset EGAD00001015700

• Fragment ends of circulating microbial DNA as signatures for infectious diseases

  Fragment ends of circulating microbial DNA as signatures for infectious diseases

  Study EGAS00001006321

• OAC scRNASeq

  Please see our related publication, 'Molecular profiling to predict immunochemotherapy outcomes in esophageal adenocarcinoma'

  Study EGAS00001006469

• Monocyte Spike-in RNASeq

  Please see our related publication, 'Tumor monocyte content predicts immunochemotherapy outcomes in esophageal adenocarcinoma'.

  Study EGAS00001007197

• Targeted_EMSeq___Development

  Development of a targeted methylation assay to determine the cell-type composition of a sample.

  Study EGAS00001007202

• Aberrant basal cell clonal dynamics shape early lung carcinogenesis

  Lung PCA - whole exome multiregion sequencing data from human preinvasive airway biopsies

  Study EGAS00001008114

• scRNAsequencing of in vitro expanded limbal stem cells of aniridia donors

  Identifying potential heterogeneity and expression differences within Aniridia limbal stem cells.

  Study EGAS00001007397

• Optimizing single-cell transcriptomic discrimination of atopic dermatitis versus psoriasis vulgaris

  Optimizing single-cell transcriptomic discrimination of atopic dermatitis versus psoriasis vulgaris

  Study EGAS00001007487

• Parkinson's Families Project

  SNP array data of 698 individuals with early onset and/or familial Parkinson's disease.

  Study EGAS00001007906

• Paired-end Whole Exome-seq analysis of GBM, additional patient.

  Dataset contains one paired-end Whole Exome sequencing sample. One normal blood sample is also included.

  Dataset EGAD00001011989

• CUTRUN files for Klco-NUP98 data

  CUTRUN files for paper titled "Fusion oncoproteins and cooperating mutations define disease phenotypes in NUP98-rearranged leukemia"

  Dataset EGAD00001015478

• RNA-sequencing of Human Thyroid cancer cell lines

  RNA-sequencing data of 5 human thyroid cancer cell lines cultured in control conditions

  Dataset EGAD00001011677

• After the completion of CINECA, EUCANCan, and euCanSHare. What's next?

  CINECA, EUCANCan, and euCanSHare were part of the EUCAN Cluster, made up of six projects that received funding under the same Horizon 2020 call. All EUCAN projects (CINECA, EUCANCan, EUCAN-Connect, euCanSHare, Receptor Plus, and ReCoDID) were aimed at facilitating data reuse and knowledge discovery by enhancing data exchange and long-term collaboration in the health field. Here are some highlights about EGA’s contribution to these projects. CINECA: advances in Federated discovery and infrastructure for cohorts CINECA (Common Infrastructure for National Cohorts in Europe, Canada, and Africa) developed a federated cloud-based infrastructure for making genomic and biomolecular data accessible. The project has assembled a virtual cohort of 1.4 million individuals from sources such as the EGA, CanDIG and H3Africa. The EGA–CRG co-leaded a work package Work Package 1 on Federated Data Discovery and Querying. Beacon v2, championed by Jordi Rambla and Lauren Fromont, has been one of the central elements for the discovery of human genetic and phenotypic data. The EGA-CRG contributed to the development of a model for cohort discovery inside the Beacon v2 model. The team also delivered a Discovery Portal was implemented to explore cohorts and individuals of synthetic data. It is a UI that gathers a network of Beacons, a service for query expansion, and a visualisation tool. Have a look at the Discovery Portal UI, gathering a network of Beacons. You will find entities such as the Barcelona Supercomputing Center (BSC), BioData.pt and the European Genomic Data Infrastructure (GDI), among others. euCanSHare: facilitation of data access management This joint EU-Canada project aimed to build a European and Canadian FAIR platform for cardiovascular data sharing and analysis. The EGA’s tasks contributed to the development of the data management plan and data flows, main web-portal and interoperability protocols. An important part of the EuCanShare platform is the data access manager, a tool for the data owners to control the access to their sensitive datasets. We built a user-friendly interface for data access committees (data owners) to easily manage their data requests and access credentials. The data access portal facilitates the creation and internal organization of the data access committees as well as the linkage of data usage conditions to specific datasets. The interface includes filters for browsing requests and page to visualize the request history helping with the handling of data access requests. EUCANCan: toward a federation of clinical institutions in oncology The EUropean-CAnadian CANcer Network worked towards building a federated network to advance personalized medicine in oncology, by promoting the standard analysis, management and sharing of harmonized genomic and phenotypic data. The EGA led tasks on defining data flows and preparing an adapted infrastructure for long-term data storage and sharing. One of the key contributions was the conception of the EGA communities, offering standard and interoperable solutions for data discovery, processing, and sharing to projects and institutions that would like to manage and share data in the context of the EGA ecosystem. What's Next? The participation in projects such as CINECA, EUCANCan, and euCanSHare provide us with experience for future projects. We are happy to enhance data sharing and reuse, vital for advancing clinical and genomic research. The Discovery Portal is a wonderful proof of concept for the Beacon network. Next, we will finalise both the network and the user interface, and make sure it can be applied to more clinically-centred settings like hospitals. Most data hosted at the EGA are about cancer research. Currently, we contribute to building tools and infrastructure to empower oncology research in several European projects such as EUCAIM, EUCANIMAGE and EOSC4Cancer. We also do not lose sight of initiatives in the field such as the International Cancer Genome Consortium (ICGC) with the project ARGO, whose data model was adopted in EUCanCan.

  Blog cineca-eucancan-and-eucanshare-were-concluded-in-june

• International Multiple Sclerosis Genetics (IMSGC) Data Access Committee

  Dac EGAC00001001662

• UCSF Brain Tumor Bioinformatics DAC

  Dac EGAC00001001858

• EGAD00010000730

  WTCCC2 Psychosis Endophenotype samples from UK, Germany, Holland, Spain and Australia using the Affymetrix 6.0 array

  Dataset EGAD00010000730

• EGAD00010000246

  Coeliac disease cases and control samples. (1958BC samples excluded)

  Dataset EGAD00010000246

• EGAD00010000248

  1958BC control samples

  Dataset EGAD00010000248

• EGAD00010000558

  SNP 6.0 arrays of small cell lung cancer

  Dataset EGAD00010000558

• Paroxysmal neurological disorders

  Paroxysmal neurological disorders

  Dataset EGAD00001000021

• Paroxysmal neurological disorders

  Paroxysmal neurological disorders

  Dataset EGAD00001000108

• A Comprehensive Catalogue of Somatic Mutations from a Human Cancer Genome

  A Comprehensive Catalogue of Somatic Mutations from a Human Cancer Genome

  Dataset EGAD00001000149

• UK10K_RARE_FIND REL-2012-01-13

  UK10K_RARE_FIND REL-2012-01-13

  Dataset EGAD00001000171

• UK10K_RARE_FIND REL-2012-02-22

  UK10K_RARE_FIND REL-2012-02-22

  Dataset EGAD00001000190

• UK10K_RARE_FIND REL-2012-07-05

  UK10K_RARE_FIND REL-2012-07-05

  Dataset EGAD00001000209

• UK10K_RARE_FIND REL-2012-11-27

  UK10K_RARE_FIND REL-2012-11-27

  Dataset EGAD00001000297

• ICGC MMML-seq Data Freeze March 2013 transcriptome sequencing

  ICGC MMML-seq Data Freeze March 2013 transcriptome sequencing

  Dataset EGAD00001000356

• SYSCOL Human colorectal cancer project pilot RNA-seq and germline genotyping

  Genotyping by array and Transcriptome profiling by high-throughput sequencing

  Dataset EGAD00001000880

• Whole genome MeDIP-seq of DNA in whole blood samples from 5yr old Swedish children (the ABIS study)

  Dataset EGAD00001001221

• Exome chip analysis file

  This data set includes the following summary level data file used for the exome chip analysis: exome_chip.sv.assoc.txt: results from single variant association analysis in exome chip

  Dataset EGAD00010001187

• RNA-seq and WGS data of MB-0152

  Identification of fusion transcripts by RNA-sequencing and Whole genome sequencing of a breast cancer patient sample (METABRIC ID MB-0152)

  Dataset EGAD00001003342

• Exome-seq data from study of juvenile myelomonocytic leukemia (JMML)

  Whole exome seqeuncing from primary human JMML samples

  Dataset EGAD00001003419

• Immunochip_genotypes

  Intensity files for Immunochip genotypes from blood

  Dataset EGAD00010001495

• MS-Twins-EPIC-PBMCs

  Genome-wide DNA methylation profiles of MZ twins clinically discordant for MS generated using Illumina’s Infinium MethylationEPIC BeadChip assay (EPIC array)

  Dataset EGAD00010001618

• GR@ACE_StageI.v02

  Binary Plink files for post-GWAS quality control in 7409 samples genotyped using Axiom 815K Spanish Biobank array (Thermo Fisher)

  Dataset EGAD00010001653

• RP3_Freeze_1

  Freeze 1 of the RP3 project

  Dataset EGAD00010000887

• REL-2014-11_2

  HipSci - Healthy Normals - Genotyping Array - November 2014

  Dataset EGAD00010000773