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• Whole exome sequencing Data from a child with ALPI deficiency and parents

  This dataset contains raw sequences (BAM files) of P1 trio: mother, father and affected child (P1). Whole exome sequencing (WES).

  Dataset EGAD00001004048

• Whole Genome Sequencing of 2 expanded clones from rhabdoid tumor case 3

  Whole Genome Sequencing of 2 expanded clones from a cell line derived from the rhabdoid tumor case 3 (2 WGS 20X)

  Dataset EGAD50000000240

• WGS

  Our cohort represents infants with ALL in whom KMT2Ar was not detected by FISH or by standard cytogenetics. Whole-genome sequencing (WGS) was performed using Illumina’s HiSeqX to a depth of >30X.

  Dataset EGAD50000000594

• Adaptive long-read and transcriptome sequencing detail a submicroscopic inv(15)(q14q15), generating two fusion transcripts and MEIS2 and NUSAP1 haploinsufficiency

  Study an inversion affecting MEIS2 using ONT adaptive sequencing.

  Study EGAS50000000632

• Methylation profiling of CDS and ES tumor samples

  Methylation profiling of 9 CDS and ES tumor samples, using the approach described in "Patient-derived tumoroids from CIC::DUX4 rearranged sarcoma identify MCL1 as a therapeutic target

  Dataset EGAD00010002760

• WES of Multiple myeloma/MGUS cases (germline) - Fastq files

  WXS - Exome capture using the Twist Human Core Exome Kit on germline DNA, paired-end (2x100bp) sequencing on a NovaSeq system. Number of samples: 295

  Dataset EGAD50000001799

• Single-cell RNA-sequencing of a multi-region pleural mesothelioma case

  Single-cell RNA-sequencing from three distant regions of an epithelioid pleural mesothelioma case.

  Study EGAS00001008062

• Polyomavirus-positive Merkel cell carcinoma derived from a trichoblastoma suggests an epithelial origin of Merkel cell carcinoma

  Tricholastoma (TB): Exome Merkel cell carcinoma (MCC): Genome and Exome Healthy tissue (HT): Exome

  Dataset EGAD00001005223

• Illumina_RNA_T-XEN_Validation_Cohort

  RNAseq on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer sample of a validation cohort of 60 PDX

  Dataset EGAD00001002883

• Whole genome sequencing of a breast cancer cohort with known functional homologous recombination status

  41 breast cancer patients with known functional homologous recombination status (matched normal and tumor genomes, n=82)

  Dataset EGAD00001008027

• Berlin Neuroblastoma Patient Genomic Data from Targeted Sequencing

  Targeted DNA sequencing data of paired primary and relapse tumor material taken from a pediatric patient with neuroblastoma.

  Dataset EGAD00001008564

• Prostate cancer datasets RNA Seq

  Total RNA Seq: 15 Samples (2 patients (MF1 and MF3)) (HiSeq) and Poly A RNA Seq: 27 Samples (4 patients Normal and Tumour ) (HiSeq)

  Dataset EGAD00001004468

• Neoadjuvant Breast Cancer Validations

  This study aims to re-sequence findings from whole genome studies using a bespoke pulldown method to validate mutations in those genomes sequenced.

  Dataset EGAD00001000663

• Genomic Analysis of Focal Nodular Hyperplasia with Associated Hepatocellular Carcinoma Unveils its Malignant Potential

  Whole exome sequencing of FNH and two HCC compartments from a single patient, along with matched germline.

  Dataset EGAD00001007702

• Single-cell dissection of the immune response after a myocardial infarction

  38 STEMI patients at hospital admission, 24 hours (acute phase) and 6-8 weeks (chronic phase) after STEMI

  Dataset EGAD00001010064

• Angiosarcoma follow-up 2 validation study

  A bespoke targeted pulldown experiment will be performed on patients with Angiosarcoma. the resulting products will be sequenced to determine the prevalence of previously found mutations in these patients.

  Dataset EGAD00001000679

• NiCOL Study Target-seq dataset

  10 samples sequenced in Target-sequencing of a panel of 571 genes (Illumina NovaSeq 6000) - Raw FASTQ data - Annotated VCF

  Dataset EGAD00001010911

• NKI PRECSION Mutations

  38 samples with DCIS and matched recurrences sequenced with a targeted mutation panel on IonTorrent.

  Dataset EGAD00001008338

• Bone Cancer - Rare Types Whole Genome

  We propose to definitively characterise the somatic genetics of a selection of rare bone cancers through generation of comprehensive catalogues of somatic mutations by high coverage genome sequencing.

  Dataset EGAD00001000785

• ChIP sequencing from a collection of PFA tumors

  ChIP data from PFA (n = 10). Raw data provided as FASTQ. Data generated on Illumina NovaSeq 6000 PE50.

  Dataset EGAD00001009045

• Associate Vice President for Research Administration & Director

  Dac EGAC00001003114

• DAC for Duke-NUS genomic sequencing projects

  Dac EGAC00001000256

• DAC for Whole Genome Sequencing of ASD quartet families

  Dac EGAC00001000288

• The Shlien Lab, The Hospital for Sick Children

  Dac EGAC00001000289

• DAC for IGMM / Usher Institute, University of Edinburgh

  Dac EGAC00001000365

• DAC for esophageal squamous cell carcinoma genomic data

  Dac EGAC00001000444

• MacFeeters Hamilton Centre for Neuro-Oncology Research (MHC-NOR)

  Dac EGAC00001000510

• DAC for Dave Lab, Duke University

  Dac EGAC00001000538

• DAC for Single Cell Transcriptomics of Colorectal Cancer

  Dac EGAC00001000550

• Data access committee for BAMS exome sequencing data.

  Dac EGAC00001000583

• DAC for DCM-cases (149 human DCM samples)

  Dac EGAC00001000673

• DAC for DCM-controls (113 human non-DCM samples)

  Dac EGAC00001000674

• DAC for AA HCC patient from National Taiwan University

  Dac EGAC00001000708

• Institut Jules Bordet Data Access Committee for EGAS00001002685 study

  Dac EGAC00001000748

• Data Access Committee for Tumor Progression Study at Karolinska Institute

  Dac EGAC00001000778

• DAC for Institute of Human Genetics, Bonn, AGA Project

  Dac EGAC00001000831

• DAC for study Hypothalamic transcriptome in Prader-Willi syndrome

  Dac EGAC00001000869

• DAC for Genomic landscpae of Chordoid Glioma study

  Dac EGAC00001000906

• Data Access Committee for the Medulloblastoma Host Genome Study

  Dac EGAC00001000910

• Data Access Committee for Niigata-NIG collaborative work

  Dac EGAC00001000955

• DAC for study Non-coding RNAs in Breast Cancer

  Dac EGAC00001001090

• DAC for Peritoneal Mesothelioma sequencing study (LAGA-VPC)

  Dac EGAC00001001093

• ASAN Center for Cancer Genome Discovery Data Access Commitee

  Dac EGAC00001001285

• ASAN Center for Cancer Genome Discovery Data Access Commitee

  Dac EGAC00001001391

• DAC for RNA-Seq Transcriptomic CD4+ T data from EGAS00001004152

  Dac EGAC00001001462

• The data usage policy for epigenomic profile of diverse cancer

  Dac EGAC00001001540

• Englander Institute for Precision Medicine - WCM - Yale - Duke DAC

  Dac EGAC00001001777

• Single cell multi-omics (scNOVA) group for CLL)

  Dac EGAC00001001880

• DAC for Smart-seq2 kidney glomerular single cell project

  Dac EGAC00001001895

• DAC for de-methylation of the FOXP3-TSDR study

  Dac EGAC00001001902